JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WNT7A_chr3_13811258_13885071	0/0	t0266	2943	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0267	2943	1	0	0	1	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0268	2945	1	0	0	1	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0269	2969	1	0	0	1	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0270	2950	1	0	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0271	2951	1	0	1	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0272	2927	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0273	2938	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0274	2939	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0275	2939	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7A_chr3_13811258_13885071	0/0	t0276	2939	1	1	0	0	0	0	copy fasta	WNT7A	chr3	13811258	13885071
WNT7B_chr22_45915366_45982162	1/0	t0001	2899	93	21	20	32	5	14	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0002	2899	83	1	10	59	5	8	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0003	2899	19	1	1	14	0	3	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0004	2899	16	0	5	3	0	8	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/1	t0005	2889	12	3	5	0	0	3	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0006	2889	11	2	8	1	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0007	2875	10	8	2	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0008	2899	5	0	0	4	1	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0009	2875	5	5	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0010	2901	4	0	1	0	1	2	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0011	2901	4	0	0	1	2	1	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0012	2899	4	4	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0013	2889	4	0	2	0	1	1	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0014	2899	4	4	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0015	2899	3	0	0	3	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0016	2899	3	0	0	3	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0017	2875	3	3	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0018	2899	3	2	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0019	2899	3	3	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0020	2899	3	3	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0021	2899	3	3	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0022	2889	2	0	2	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0023	2875	2	2	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0024	2899	2	2	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0025	2899	2	2	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0026	2889	2	0	0	0	1	1	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0027	2889	2	1	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0028	2889	2	0	2	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0029	2899	2	2	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0030	2875	1	0	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0031	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0032	2899	1	0	0	0	0	1	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0033	2899	1	0	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0034	2875	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0035	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0036	2889	1	0	0	0	0	1	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0037	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0038	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0039	2889	1	0	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162