JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WNT7B_chr22_45915366_45982162	0/0	t0040	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0041	2899	1	0	0	1	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0042	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0043	2899	1	0	0	1	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0044	2899	1	0	0	0	0	1	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0045	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0046	2899	1	0	0	0	0	1	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0047	2889	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0048	2899	1	0	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0049	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0050	2901	1	0	0	0	1	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0051	2889	1	0	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0052	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0053	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0054	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0055	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0056	2875	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0057	2899	1	0	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0058	2899	1	0	0	0	1	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0059	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0060	2887	1	0	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0061	2899	1	0	0	0	0	1	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0062	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0063	2899	1	0	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0064	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0065	2899	1	0	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0066	2875	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0067	2899	1	1	0	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT7B_chr22_45915366_45982162	0/0	t0068	2899	1	0	1	0	0	0	copy fasta	WNT7B	chr22	45915366	45982162
WNT8A_chr5_138079033_138096541	1/0	t0001	564	206	59	33	86	5	22	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/1	t0002	564	104	2	12	74	3	12	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	t0003	564	47	15	18	6	4	4	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	t0004	564	41	18	16	2	2	3	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	t0005	564	4	0	0	4	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	t0006	564	1	0	1	0	0	0	copy fasta	WNT8A	chr5	138079033	138096541
WNT8A_chr5_138079033_138096541	0/0	t0007	564	1	0	0	0	0	1	copy fasta	WNT8A	chr5	138079033	138096541
WNT8B_chr10_100458009_100488744	1/0	t0001	1089	242	55	48	98	11	29	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/1	t0002	1089	69	9	11	36	5	7	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	t0003	1089	10	10	0	0	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	t0004	1089	4	4	0	0	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	t0005	1089	2	0	0	2	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	t0006	1089	2	2	0	0	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	t0007	1089	1	1	0	0	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	t0008	1089	1	1	0	0	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	t0009	1089	1	0	1	0	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	t0010	1089	1	1	0	0	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT8B_chr10_100458009_100488744	0/0	t0011	1089	1	1	0	0	0	0	copy fasta	WNT8B	chr10	100458009	100488744
WNT9A_chr1_227913656_227952932	0/0	t0001	2906	63	3	14	31	1	14	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/1	t0002	2902	58	6	21	20	6	4	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0003	2904	54	1	5	36	4	8	copy fasta	WNT9A	chr1	227913656	227952932