JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WNT9A_chr1_227913656_227952932	0/0	t0004	2902	44	23	4	14	0	3	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0005	2904	27	0	1	26	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0006	2920	19	1	3	8	1	6	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0007	2902	15	2	3	9	0	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0008	2906	13	0	7	6	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0009	2904	12	12	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	1/0	t0010	2908	12	2	2	3	3	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0011	2902	7	0	3	4	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0012	2911	5	5	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0013	2903	5	5	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0014	2920	4	4	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0015	2904	4	0	2	0	2	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0016	2902	4	4	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0017	2904	4	4	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0018	2922	3	0	0	3	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0019	2902	3	0	1	2	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0020	2914	3	3	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0021	2916	3	3	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0022	2902	2	0	0	0	1	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0023	2902	2	0	2	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0024	2914	2	2	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0025	2904	2	0	0	2	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0026	2900	2	0	0	2	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0027	2918	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0028	2914	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0029	2918	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0030	2924	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0031	2920	1	0	0	0	0	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0032	2911	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0033	2915	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0034	2900	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0035	2902	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0036	2904	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0037	2904	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0038	2904	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0039	2904	1	0	0	0	0	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0040	2904	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0041	2898	1	0	0	0	0	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0042	2904	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0043	2902	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0044	2893	1	0	1	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0045	2902	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0046	2902	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0047	2904	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0048	2904	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0049	2904	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0050	2904	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0051	2905	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0052	2914	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0053	2902	1	0	1	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932