JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WNT9A_chr1_227913656_227952932	0/0	t0054	2906	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0055	2906	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0056	2908	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0057	2918	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0058	2906	1	0	0	0	0	1	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0059	2904	1	0	0	1	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9A_chr1_227913656_227952932	0/0	t0060	2920	1	1	0	0	0	0	copy fasta	WNT9A	chr1	227913656	227952932
WNT9B_chr17_46846583_46885560	0/1	t0001	3899	188	21	33	102	9	22	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0002	3899	111	22	19	53	1	16	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0003	3899	24	9	11	2	1	1	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0004	3899	17	17	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0005	3899	7	6	1	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0006	3899	6	0	6	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0007	3899	4	4	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0008	3899	4	0	2	0	1	1	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0009	3899	3	3	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0010	3899	2	0	0	2	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0011	3899	2	2	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0012	3899	1	0	0	0	0	1	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0013	3899	1	1	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0014	3899	1	0	1	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0015	3899	1	1	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0016	3899	1	0	1	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0017	3899	1	0	0	1	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0018	3899	1	0	0	0	1	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0019	3899	1	0	0	1	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0020	3899	1	0	1	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0021	3899	1	0	0	1	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0022	3899	1	0	1	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0023	3899	1	1	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0024	3899	1	0	0	1	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0025	3899	1	0	0	0	0	1	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0026	3899	1	0	0	1	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0027	3899	1	1	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0028	3899	1	1	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0029	3899	1	0	0	0	1	0	copy fasta	WNT9B	chr17	46846583	46885560
WNT9B_chr17_46846583_46885560	0/0	t0030	3899	1	1	0	0	0	0	copy fasta	WNT9B	chr17	46846583	46885560
WRAP53_chr17_7683477_7708502	1/1	t0001	102	381	88	68	165	14	44	copy fasta	WRAP53	chr17	7683477	7708502
WRAP53_chr17_7683477_7708502	0/0	t0002	102	3	0	0	3	0	0	copy fasta	WRAP53	chr17	7683477	7708502
WRAP73_chr1_3625770_3655103	1/0	t0001	310	242	83	46	81	8	23	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/1	t0002	302	129	9	28	63	10	18	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	t0003	310	2	2	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	t0004	302	2	0	0	2	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	t0005	302	1	1	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	t0006	310	1	1	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	t0007	310	1	1	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	t0008	310	1	1	0	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	t0009	310	1	0	0	0	0	1	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	t0010	310	1	0	1	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103
WRAP73_chr1_3625770_3655103	0/0	t0011	302	1	0	1	0	0	0	copy fasta	WRAP73	chr1	3625770	3655103