JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WSB1_chr17_27289114_27320926	0/0	t0033	3840	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0034	3840	1	0	1	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0035	3840	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0036	3840	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0037	3840	1	0	0	1	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0038	3839	1	1	0	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0039	3840	1	1	0	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB1_chr17_27289114_27320926	0/0	t0040	3840	1	1	0	0	0	0	copy fasta	WSB1	chr17	27289114	27320926
WSB2_chr12_118027687_118066179	1/1	t0001	1641	180	35	42	73	9	19	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0002	1641	137	14	21	76	5	21	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0003	1637	16	15	1	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0004	1642	16	13	1	2	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0005	1641	15	0	0	15	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0006	1638	13	7	5	0	0	1	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0007	1640	10	0	0	9	1	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0008	1642	6	5	0	1	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0009	1640	3	1	0	1	0	1	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0010	1642	3	3	0	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0011	1641	1	0	0	0	1	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0012	1641	1	0	0	1	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0013	1642	1	1	0	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0014	1636	1	1	0	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0015	1638	1	1	0	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0016	1641	1	0	0	0	0	1	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0017	1636	1	1	0	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0018	1637	1	1	0	0	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0019	1640	1	0	0	0	0	1	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0020	1641	1	0	0	1	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSB2_chr12_118027687_118066179	0/0	t0021	1683	1	0	0	1	0	0	copy fasta	WSB2	chr12	118027687	118066179
WSCD1_chr17_6065379_6129427	0/0	t0001	4329	108	3	20	69	5	11	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0002	4330	61	0	7	43	2	9	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0003	4330	38	1	12	13	1	11	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0004	4330	19	14	1	0	1	3	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0005	4330	16	0	7	5	3	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0006	4330	10	0	0	10	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0007	4330	9	8	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0008	4330	9	0	7	1	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/1	t0009	4330	8	0	6	0	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0010	4330	6	0	0	6	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0011	4329	6	1	2	3	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0012	4330	5	0	2	0	1	2	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0013	4330	5	5	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0014	4330	5	5	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0015	4330	5	5	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0016	4329	4	0	0	4	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0017	4330	4	4	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0018	4330	4	1	1	0	0	2	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0019	4330	4	0	1	3	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0020	4329	4	4	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0021	4330	4	0	0	4	0	0	copy fasta	WSCD1	chr17	6065379	6129427