JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WSCD1_chr17_6065379_6129427	0/0	t0022	4330	4	4	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0023	4330	3	3	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0024	4330	3	0	0	2	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0025	4330	3	3	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0026	4330	3	3	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0027	4330	2	0	0	2	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0028	4329	2	0	0	2	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	1/0	t0029	4329	2	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0030	4330	2	0	1	0	1	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0031	4330	2	2	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0032	4330	2	0	0	2	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0033	4329	2	0	0	0	2	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0034	4330	2	0	0	2	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0035	4330	2	2	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0036	4330	2	0	0	0	0	2	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0037	4330	2	1	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0038	4330	2	0	0	2	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0039	4330	2	0	0	2	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0040	4329	2	2	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0041	4329	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0042	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0043	4329	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0044	4329	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0045	4330	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0046	4330	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0047	4330	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0048	4329	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0049	4330	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0050	4330	1	0	0	0	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0051	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0052	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0053	4329	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0054	4329	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0055	4330	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0056	4330	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0057	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0058	4330	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0059	4330	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0060	4329	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0061	4329	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0062	4329	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0063	4330	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0064	4329	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0065	4330	1	0	0	0	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0066	4296	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0067	4330	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0068	4330	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0069	4330	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0070	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0071	4329	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427