JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WSCD1_chr17_6065379_6129427	0/0	t0072	4330	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0073	4329	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0074	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0075	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0076	4329	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0077	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0078	4329	1	0	1	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0079	4329	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0080	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0081	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0082	4330	1	0	0	0	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0083	4330	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0084	4329	1	0	0	1	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0085	4329	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0086	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0087	4330	1	0	0	0	0	1	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0088	4329	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0089	4329	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0090	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0091	4329	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD1_chr17_6065379_6129427	0/0	t0092	4330	1	1	0	0	0	0	copy fasta	WSCD1	chr17	6065379	6129427
WSCD2_chr12_108124288_108255537	0/0	t0001	3385	41	6	10	14	2	9	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0002	3387	24	1	2	16	0	5	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0003	3387	18	4	4	9	1	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	1/1	t0004	3385	15	6	3	3	1	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0005	3387	12	0	5	5	0	2	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0006	3391	11	1	4	6	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0007	3387	8	1	3	2	1	1	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0008	3387	8	0	1	4	3	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0009	3391	8	0	1	7	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0010	3387	7	7	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0011	3385	7	7	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0012	3385	6	1	1	0	1	3	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0013	3389	6	3	1	2	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0014	3385	6	0	5	1	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0015	3395	5	2	1	0	1	1	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0016	3385	4	4	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0017	3393	4	2	1	0	0	1	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0018	3385	4	2	1	0	0	1	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0019	3395	4	0	1	0	1	2	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0020	3387	3	0	0	1	0	2	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0021	3389	3	3	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0022	3389	3	2	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0023	3387	3	0	0	3	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0024	3395	3	0	0	0	1	2	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0025	3389	3	3	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0026	3387	3	0	2	0	1	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0027	3387	2	2	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0028	3386	2	0	2	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0029	3389	2	0	2	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537