JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WSCD2_chr12_108124288_108255537	0/0	t0030	3399	2	2	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0031	3387	2	1	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0032	3387	2	0	2	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0033	3391	2	1	0	1	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0034	3389	2	2	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0035	3387	2	1	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0036	3389	2	2	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0037	3389	2	2	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0038	3393	2	1	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0039	3387	2	0	0	2	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0040	3389	2	1	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0041	3387	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0042	3395	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0043	3387	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0044	3387	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0045	3385	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0046	3393	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0047	3387	1	0	0	0	0	1	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0048	3387	1	0	0	1	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0049	3387	1	0	0	1	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0050	3385	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0051	3385	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0052	3387	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0053	3396	1	0	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0054	3387	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0055	3387	1	0	0	1	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0056	3425	1	0	0	0	0	1	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0057	3389	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0058	3387	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0059	3391	1	0	0	1	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0060	3401	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0061	3387	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0062	3387	1	0	0	0	1	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0063	3387	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0064	3389	1	0	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0065	3385	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0066	3386	1	0	0	0	0	1	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0067	3387	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0068	3389	1	0	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0069	3389	1	0	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0070	3391	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0071	3385	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0072	3389	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0073	3385	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0074	3389	1	1	0	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0075	3387	1	0	0	1	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0076	3387	1	0	0	1	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WSCD2_chr12_108124288_108255537	0/0	t0077	3391	1	0	1	0	0	0	copy fasta	WSCD2	chr12	108124288	108255537
WT1_chr11_32382775_32440539	1/1	t0001	1463	101	5	27	48	1	18	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0002	1458	95	5	16	57	2	15	copy fasta	WT1	chr11	32382775	32440539