JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WT1_chr11_32382775_32440539	0/0	t0003	1459	28	16	6	0	0	6	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0004	1457	16	16	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0005	1457	14	0	0	8	0	6	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0006	1459	11	11	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0007	1465	10	1	4	5	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0008	1463	7	7	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0009	1461	6	3	0	3	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0010	1461	3	2	1	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0011	1457	3	3	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0012	1460	3	0	1	2	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0013	1458	3	0	1	0	0	2	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0014	1465	3	2	1	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0015	1461	3	0	2	1	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0016	1459	3	3	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0017	1459	2	2	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0018	1463	2	1	1	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0019	1458	1	0	0	0	0	1	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0020	1457	1	1	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0021	1453	1	1	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0022	1463	1	0	0	1	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0023	1461	1	1	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0024	1457	1	0	1	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0025	1453	1	0	1	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0026	1459	1	0	0	1	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0027	1457	1	0	0	0	1	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0028	1461	1	1	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0029	1461	1	1	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0030	1457	1	1	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0031	1465	1	1	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0032	1457	1	1	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WT1_chr11_32382775_32440539	0/0	t0033	1461	1	1	0	0	0	0	copy fasta	WT1	chr11	32382775	32440539
WTAP_chr6_159722506_159761319	1/1	t0001	915	182	35	36	79	10	20	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0002	916	150	21	32	79	4	14	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0003	917	28	7	7	8	2	4	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0004	914	10	10	0	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0005	911	6	6	0	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0006	914	6	5	0	1	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0007	932	2	2	0	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0008	934	2	2	0	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0009	935	1	1	0	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0010	915	1	0	1	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0011	915	1	0	0	1	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0012	931	1	1	0	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0013	936	1	1	0	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0014	938	1	1	0	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0015	943	1	1	0	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0016	915	1	1	0	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0017	916	1	1	0	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTAP_chr6_159722506_159761319	0/0	t0018	914	1	1	0	0	0	0	copy fasta	WTAP	chr6	159722506	159761319
WTIP_chr19_34476758_34517304	0/1	t0001	12253	71	2	12	41	1	14	copy fasta	WTIP	chr19	34476758	34517304