JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WTIP_chr19_34476758_34517304	0/0	t0002	12248	21	0	1	17	0	3	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0003	12233	9	0	9	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0004	12254	6	0	1	4	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0005	12252	6	0	2	3	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0006	12248	6	5	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0007	12244	5	0	1	4	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0008	12244	4	0	0	4	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0009	12254	4	0	2	0	2	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0010	12254	4	0	2	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0011	12253	3	0	1	0	0	2	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0012	12253	3	0	3	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0013	12253	3	0	1	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0014	12247	3	0	0	3	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0015	12245	3	0	0	3	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0016	12242	3	3	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0017	12230	3	0	0	0	2	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0018	12252	3	0	1	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0019	12251	3	0	3	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0020	12257	3	0	1	0	0	2	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0021	12255	3	0	0	2	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	1/0	t0022	12253	3	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0023	12253	3	0	0	3	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0024	12253	3	0	0	3	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0025	12252	3	0	1	1	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0026	12244	3	0	0	0	0	3	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0027	12248	3	3	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0028	12246	2	2	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0029	12241	2	2	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0030	12253	2	2	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0031	12247	2	0	1	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0032	12248	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0033	12248	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0034	12248	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0035	12249	2	2	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0036	12248	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0037	12248	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0038	12248	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0039	12248	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0040	12240	2	2	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0041	12249	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0042	12248	2	2	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0043	12249	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0044	12213	2	2	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0045	12253	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0046	12241	2	2	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0047	12206	2	2	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0048	12253	2	1	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0049	12258	2	0	0	0	2	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0050	12254	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0051	12253	2	0	0	2	0	0	copy fasta	WTIP	chr19	34476758	34517304