JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WTIP_chr19_34476758_34517304	0/0	t0102	12248	1	0	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0103	12247	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0104	12248	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0105	12248	1	0	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0106	12245	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0107	12248	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0108	12255	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0109	12245	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0110	12250	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0111	12249	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0112	12243	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0113	12248	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0114	12213	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0115	12249	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0116	12241	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0117	12242	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0118	12246	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0119	12246	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0120	12246	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0121	12251	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0122	12251	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0123	12251	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0124	12253	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0125	12253	1	0	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0126	12254	1	0	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0127	12225	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0128	12233	1	0	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0129	12236	1	0	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0130	12231	1	0	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0131	12252	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0132	12203	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0133	12247	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0134	12252	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0135	12251	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0136	12253	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0137	12248	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0138	12250	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0139	12253	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0140	12253	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0141	12252	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0142	12251	1	0	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0143	12253	1	0	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0144	12254	1	0	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0145	12254	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0146	12253	1	0	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0147	12226	1	0	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0148	12252	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0149	12251	1	0	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0150	12254	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0151	12257	1	0	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304