JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
WTIP_chr19_34476758_34517304	0/0	t0152	12253	1	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0153	12253	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0154	12254	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0155	12254	1	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0156	12253	1	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0157	12258	1	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0158	12254	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0159	12257	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0160	12254	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0161	12255	1	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0162	12254	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0163	12255	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0164	12237	1	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0165	12237	1	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0166	12247	1	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0167	12247	1	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0168	12251	1	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0169	12247	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0170	12247	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0171	12247	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0172	12247	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0173	12247	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0174	12248	1	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0175	12248	1	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0176	12248	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0177	12248	1	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0178	12248	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0179	12248	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0180	12247	1	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0181	12252	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0182	12250	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0183	12253	1	0	0	0	1	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0184	12254	1	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0185	12204	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0186	12245	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0187	12252	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0188	12253	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0189	12241	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0190	12241	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0191	12244	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0192	12240	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0193	12246	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0194	12248	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0195	12248	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0196	12248	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0197	12247	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0198	12237	1	1	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0199	12232	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0200	12230	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0201	12231	1	0	0	1	0	copy fasta	WTIP	chr19	34476758	34517304