JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WTIP_chr19_34476758_34517304	0/0	t0202	12231	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0203	12233	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0204	12230	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0205	12229	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0206	12246	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0207	12252	1	0	0	1	0	0	copy fasta	WTIP	chr19	34476758	34517304
WTIP_chr19_34476758_34517304	0/0	t0208	12248	1	1	0	0	0	0	copy fasta	WTIP	chr19	34476758	34517304
WWC1_chr5_168286645_168477303	0/0	t0001	3794	58	21	14	18	1	4	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/1	t0002	3794	56	9	20	9	7	10	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0003	3794	52	5	8	33	1	5	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0004	3794	27	8	4	13	0	2	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0005	3794	10	9	1	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0006	3794	7	5	2	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0007	3794	5	5	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0008	3794	5	5	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0009	3794	5	0	4	1	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0010	3794	3	3	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0011	3795	3	0	3	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0012	3794	2	1	1	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0013	3794	2	2	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0014	3794	2	1	1	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0015	3794	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0016	3794	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0017	3794	1	0	1	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0018	3794	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0019	3795	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0020	3795	1	0	1	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0021	3795	1	0	0	1	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0022	3794	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0023	3794	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0024	3794	1	0	0	0	1	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0025	3794	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0026	3794	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0027	3794	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	1/0	t0028	3795	1	0	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0029	3794	1	1	0	0	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0030	3794	1	0	0	1	0	0	copy fasta	WWC1	chr5	168286645	168477303
WWC1_chr5_168286645_168477303	0/0	t0031	3794	1	0	0	0	0	1	copy fasta	WWC1	chr5	168286645	168477303
WWC2_chr4_183094257_183325777	0/1	t0001	5287	42	10	5	18	2	6	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0002	5284	35	11	4	18	0	2	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0003	5286	31	5	7	14	1	4	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0004	5284	29	1	7	16	1	4	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0005	5286	24	2	3	14	1	4	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0006	5286	13	7	3	0	1	2	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	1/0	t0007	5284	7	5	1	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0008	5286	4	3	1	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0009	5286	4	0	0	3	0	1	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0010	5285	4	4	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0011	5285	4	0	3	0	0	1	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0012	5284	3	3	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777