JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WWC2_chr4_183094257_183325777	0/0	t0013	5284	3	3	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0014	5285	3	2	1	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0015	5286	3	0	0	3	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0016	5285	3	0	0	0	1	2	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0017	5286	3	2	1	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0018	5286	2	2	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0019	5287	2	0	0	1	1	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0020	5286	2	0	0	2	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0021	5286	2	0	1	0	1	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0022	5286	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0023	5284	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0024	5284	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0025	5285	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0026	5284	1	0	0	0	0	1	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0027	5284	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0028	5287	1	0	0	0	1	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0029	5287	1	0	0	1	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0030	5287	1	0	1	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0031	7494	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0032	5286	1	0	0	1	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0033	5286	1	0	0	0	0	1	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0034	5287	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0035	5287	1	0	0	1	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0036	5286	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0037	5284	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0038	5286	1	1	0	0	0	0	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0039	5284	1	0	0	0	0	1	copy fasta	WWC2	chr4	183094257	183325777
WWC2_chr4_183094257_183325777	0/0	t0040	5287	1	0	0	0	0	1	copy fasta	WWC2	chr4	183094257	183325777
WWOX_chr16_78094654_79217667	0/0	t0001	997	51	19	10	14	0	8	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0002	997	16	2	6	5	1	2	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0003	997	16	4	2	5	0	5	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0004	1002	12	9	1	1	0	1	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0005	997	10	2	1	6	0	1	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0006	997	5	0	3	0	1	1	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0007	997	4	4	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0008	997	4	4	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0009	997	2	2	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0010	997	2	0	0	0	0	2	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0011	997	2	0	1	0	0	1	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0012	1002	2	0	1	0	0	1	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0013	1002	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0014	997	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0015	1002	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0016	1002	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0017	997	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0018	997	1	0	0	1	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0019	997	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0020	997	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0021	997	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0022	997	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667