JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WWOX_chr16_78094654_79217667	0/0	t0023	997	1	0	0	1	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0024	1002	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0025	1002	1	0	0	1	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0026	997	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0027	997	1	1	0	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWOX_chr16_78094654_79217667	0/0	t0028	997	1	0	1	0	0	0	copy fasta	WWOX	chr16	78094654	79217667
WWP1_chr8_86337547_86473503	1/0	t0001	2109	133	39	23	53	4	13	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/1	t0002	2109	100	14	16	54	3	12	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0003	2109	30	10	5	10	1	4	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0004	2109	16	13	1	0	0	2	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0005	2109	6	1	5	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0006	2109	3	3	0	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0007	2109	2	0	2	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0008	2109	2	0	0	2	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0009	2109	2	0	0	0	0	2	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0010	2109	1	1	0	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0011	2109	1	0	0	0	0	1	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0012	2109	1	0	0	1	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0013	2109	1	0	1	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0014	2109	1	1	0	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP1_chr8_86337547_86473503	0/0	t0015	2109	1	0	1	0	0	0	copy fasta	WWP1	chr8	86337547	86473503
WWP2_chr16_69757332_69946739	0/0	t0001	1875	180	40	24	91	4	21	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	1/0	t0002	1875	43	2	18	7	5	10	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/1	t0003	1875	34	0	14	13	3	3	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0004	1875	19	17	2	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0005	1875	9	9	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0006	1875	4	0	1	0	2	1	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0007	1875	4	4	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0008	1875	3	3	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0009	1875	3	3	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0010	1875	2	0	0	2	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0011	1875	2	2	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0012	1875	2	0	0	2	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0013	1875	2	2	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0014	1875	1	1	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0015	1875	1	0	1	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0016	1875	1	0	0	1	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0017	1875	1	0	0	1	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0018	1875	1	0	0	0	0	1	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0019	1875	1	0	0	1	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWP2_chr16_69757332_69946739	0/0	t0020	1875	1	1	0	0	0	0	copy fasta	WWP2	chr16	69757332	69946739
WWTR1_chr3_149512235_149663025	0/0	t0001	3835	67	9	7	39	1	11	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0002	3836	44	6	20	7	3	8	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/1	t0003	3835	37	5	7	19	0	5	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0004	3835	34	14	5	15	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0005	3835	21	5	3	10	0	3	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0006	3835	17	14	2	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0007	3835	15	0	2	12	1	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0008	3835	13	0	0	13	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0009	3835	7	5	0	2	0	0	copy fasta	WWTR1	chr3	149512235	149663025