JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C19orf12_chr19_29693937_29720261	0/0	t0014	3921	5	5	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0015	3923	4	4	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0016	3922	4	0	0	4	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0017	3922	4	0	0	4	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0018	3923	3	0	0	3	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0019	3922	3	0	0	3	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0020	3922	2	2	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0021	3921	2	2	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0022	3921	2	0	0	2	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0023	3921	2	2	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0024	3921	2	2	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0025	3923	2	0	0	2	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0026	3921	2	2	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0027	3922	2	2	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0028	3924	1	1	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0029	3924	1	1	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0030	3921	1	1	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0031	3922	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0032	3921	1	1	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0033	3921	1	1	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0034	3921	1	0	1	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0035	3921	1	0	0	0	0	1	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0036	3922	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0037	3922	1	0	0	0	0	1	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0038	3922	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0039	3933	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0040	3922	1	0	1	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0041	3923	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0042	3923	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0043	3923	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0044	3923	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0045	3923	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0046	3923	1	0	1	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0047	3923	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0048	3922	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0049	3922	1	0	1	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0050	3922	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0051	3912	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0052	3922	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0053	3922	1	0	0	1	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf12_chr19_29693937_29720261	0/0	t0054	3921	1	1	0	0	0	0	copy fasta	C19orf12	chr19	29693937	29720261
C19orf18_chr19_57953437_57979534	1/1	t0001	268	330	55	58	168	12	35	copy fasta	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	t0002	268	60	29	10	12	3	6	copy fasta	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	t0003	268	8	0	6	0	1	1	copy fasta	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	t0004	256	7	7	0	0	0	0	copy fasta	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	t0005	268	2	2	0	0	0	0	copy fasta	C19orf18	chr19	57953437	57979534
C19orf18_chr19_57953437_57979534	0/0	t0006	256	1	1	0	0	0	0	copy fasta	C19orf18	chr19	57953437	57979534
C19orf25_chr19_1468201_1484215	1/1	t0001	1887	261	31	60	118	11	39	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0002	1887	36	0	4	27	0	5	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0003	1887	21	15	1	2	2	1	copy fasta	C19orf25	chr19	1468201	1484215