JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WWTR1_chr3_149512235_149663025	0/0	t0010	3835	5	0	0	5	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0011	3835	5	2	3	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0012	3834	5	5	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0013	3835	5	2	0	3	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0014	3835	4	0	0	4	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0015	3835	4	3	1	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0016	3835	4	4	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0017	3835	4	3	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0018	3835	3	0	0	3	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0019	3835	3	3	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0020	3834	3	3	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0021	3835	2	0	0	2	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0022	3835	2	0	0	2	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0023	3835	2	0	0	2	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0024	3835	2	0	2	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0025	3835	2	0	0	0	1	1	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0026	3836	2	0	2	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0027	3836	2	0	1	0	0	1	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0028	3835	1	1	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0029	3835	1	0	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	1/0	t0030	3835	1	0	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0031	3835	1	0	1	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0032	3835	1	1	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0033	3835	1	0	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0034	3835	1	1	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0035	3835	1	0	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0036	3835	1	0	0	0	0	1	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0037	3835	1	1	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0038	3835	1	0	0	0	0	1	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0039	3835	1	1	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0040	3836	1	1	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0041	3834	1	0	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0042	3835	1	1	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0043	3835	1	0	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0044	3835	1	1	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0045	3835	1	0	0	1	0	0	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0046	3835	1	0	0	0	0	1	copy fasta	WWTR1	chr3	149512235	149663025
WWTR1_chr3_149512235_149663025	0/0	t0047	3835	1	1	0	0	0	0	copy fasta	WWTR1	chr3	149512235	149663025
XAB2_chr19_7614525_7634545	1/1	t0001	80	297	82	67	113	10	23	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	t0002	73	72	12	5	41	1	13	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	t0003	81	7	0	0	5	0	2	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	t0004	81	5	1	2	1	0	1	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	t0005	74	3	0	0	3	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	t0006	82	2	0	0	1	0	1	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	t0007	80	2	0	0	0	1	1	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	t0008	80	1	1	0	0	0	0	copy fasta	XAB2	chr19	7614525	7634545
XAB2_chr19_7614525_7634545	0/0	t0009	81	1	0	0	0	0	1	copy fasta	XAB2	chr19	7614525	7634545
XAF1_chr17_6751046_6780647	1/0	t0001	2512	158	21	40	70	9	17	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0002	2512	157	28	20	84	6	19	copy fasta	XAF1	chr17	6751046	6780647
XAF1_chr17_6751046_6780647	0/0	t0003	2512	28	0	1	24	0	3	copy fasta	XAF1	chr17	6751046	6780647