JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XBP1_chr22_28789560_28805569	1/1	t0001	661	287	60	44	124	16	41	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	t0002	661	96	21	10	62	0	3	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	t0003	661	8	0	0	8	0	0	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	t0004	661	8	0	0	8	0	0	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	t0005	661	4	0	0	4	0	0	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	t0006	661	2	2	0	0	0	0	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	t0007	661	2	2	0	0	0	0	copy fasta	XBP1	chr22	28789560	28805569
XBP1_chr22_28789560_28805569	0/0	t0008	661	1	1	0	0	0	0	copy fasta	XBP1	chr22	28789560	28805569
XCL1_chr1_168571605_168587069	1/1	t0001	883	239	24	40	143	1	29	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0002	883	71	1	8	50	2	10	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0003	883	35	1	15	5	6	8	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0004	883	34	15	9	4	3	3	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0005	883	19	18	1	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0006	883	10	10	0	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0007	883	10	0	0	10	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0008	883	8	8	0	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0009	883	5	5	0	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0010	883	4	4	0	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0011	883	3	3	0	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0012	883	2	2	0	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0013	883	2	2	0	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0014	883	2	0	1	1	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0015	883	2	0	0	2	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0016	883	2	2	0	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0017	883	2	0	2	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0018	883	1	0	1	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0019	883	1	0	0	1	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0020	883	1	1	0	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0021	883	1	0	0	1	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0022	883	1	0	1	0	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL1_chr1_168571605_168587069	0/0	t0023	883	1	0	0	1	0	0	copy fasta	XCL1	chr1	168571605	168587069
XCL2_chr1_168535768_168548997	0/1	t0001	218	235	12	31	169	3	19	copy fasta	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	1/0	t0002	218	138	52	29	33	5	18	copy fasta	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	t0003	218	56	29	8	7	3	9	copy fasta	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	t0004	218	8	0	8	0	0	0	copy fasta	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	t0005	218	4	3	0	1	0	0	copy fasta	XCL2	chr1	168535768	168548997
XCL2_chr1_168535768_168548997	0/0	t0006	218	1	0	0	0	1	0	copy fasta	XCL2	chr1	168535768	168548997
XCR1_chr3_46012007_46032483	1/1	t0001	4038	159	17	30	84	8	18	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0002	4037	95	15	12	58	6	4	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0003	4038	40	38	2	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0004	4038	32	0	6	11	2	13	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0005	4038	29	8	1	16	0	4	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0006	4038	10	0	6	3	0	1	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0007	4027	9	6	3	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0008	4038	3	3	0	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0009	4038	3	3	0	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0010	4037	2	2	0	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0011	4038	2	0	0	2	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0012	4038	2	0	1	0	0	1	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0013	4038	2	0	0	2	0	0	copy fasta	XCR1	chr3	46012007	46032483