JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XCR1_chr3_46012007_46032483	0/0	t0014	4038	1	1	0	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0015	4038	1	1	0	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0016	4038	1	0	0	1	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0017	4038	1	0	0	1	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0018	4038	1	0	1	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0019	4038	1	0	0	0	0	1	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0020	4038	1	1	0	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0021	4038	1	0	0	1	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0022	4038	1	0	0	1	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0023	4038	1	1	0	0	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0024	4038	1	0	0	1	0	0	copy fasta	XCR1	chr3	46012007	46032483
XCR1_chr3_46012007_46032483	0/0	t0025	4038	1	0	0	1	0	0	copy fasta	XCR1	chr3	46012007	46032483
XDH_chr2_31329321_31419742	0/0	t0001	1714	144	6	36	73	9	20	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/1	t0002	1714	83	42	9	18	3	10	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0003	1712	45	2	8	31	2	2	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0004	1714	40	22	8	8	0	2	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0005	1714	16	10	2	4	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0006	1714	12	0	1	11	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	1/0	t0007	1714	9	5	2	0	0	1	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0008	1714	5	5	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0009	1714	3	3	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0010	1714	2	0	0	2	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0011	1714	2	0	0	2	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0012	1714	2	1	0	0	0	1	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0013	1714	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0014	1714	1	1	0	0	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0015	1714	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0016	1714	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0017	1714	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0018	1714	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XDH_chr2_31329321_31419742	0/0	t0019	1714	1	0	0	1	0	0	copy fasta	XDH	chr2	31329321	31419742
XG_chrX_2747040_2821500	0/0	t0001	2372	105	16	14	55	7	13	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/1	t0002	2370	40	0	19	13	4	3	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0003	2368	38	6	5	24	0	3	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0004	2372	22	0	0	22	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0005	2366	18	15	2	1	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0006	2366	11	0	1	9	0	1	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0007	2354	7	7	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0008	2356	7	6	1	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0009	2374	5	0	1	2	2	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0010	2368	4	2	1	0	0	1	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0011	2360	4	0	3	0	0	1	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0012	2358	3	2	1	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0013	2370	3	3	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0014	2368	3	0	0	0	0	3	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0015	2370	3	2	0	1	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0016	2368	3	0	0	1	0	2	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0017	2362	3	0	0	3	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0018	2362	2	0	0	2	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0019	2370	2	1	0	1	0	0	copy fasta	XG	chrX	2747040	2821500