JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XG_chrX_2747040_2821500	0/0	t0020	2366	2	2	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0021	2368	2	2	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0022	2354	2	2	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0023	2376	2	0	2	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0024	2372	2	0	0	1	0	1	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0025	2366	2	2	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0026	2372	2	0	0	2	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	1/0	t0027	2356	2	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0028	2366	2	0	0	2	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0029	2372	1	0	0	1	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0030	2364	1	0	0	1	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0031	2376	1	0	1	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0032	2364	1	0	0	0	0	1	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0033	2372	1	0	0	1	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0034	2366	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0035	2372	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0036	2366	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0037	2376	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0038	2374	1	0	1	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0039	2372	1	0	0	1	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0040	2372	1	0	1	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0041	2366	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0042	2378	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0043	2367	1	0	0	1	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0044	2358	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0045	2370	1	0	1	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0046	2370	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0047	2366	1	0	1	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0048	2358	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XG_chrX_2747040_2821500	0/0	t0049	2372	1	1	0	0	0	0	copy fasta	XG	chrX	2747040	2821500
XIAP_chrX_123855053_123918972	1/1	t0001	7065	96	12	27	46	0	9	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0002	7066	50	5	8	28	2	7	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0003	7065	31	24	2	4	1	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0004	7066	20	2	11	4	3	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0005	6931	8	8	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0006	7065	6	0	4	0	1	1	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0007	7065	6	6	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0008	7064	4	3	1	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0009	7065	3	1	2	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0010	7065	2	0	1	0	0	1	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0011	7066	2	0	0	2	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0012	7064	2	0	0	2	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0013	7065	2	2	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0014	7058	2	2	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0015	7064	1	0	1	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0016	7066	1	0	0	0	0	1	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0017	7065	1	0	0	0	0	1	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0018	7065	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0019	7065	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0020	7069	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972