JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XIAP_chrX_123855053_123918972	0/0	t0021	7066	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0022	7066	1	0	1	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0023	7065	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0024	7061	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0025	7066	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0026	7065	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0027	7065	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0028	7066	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0029	7065	1	0	0	0	1	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0030	7066	1	0	0	0	0	1	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0031	7065	1	0	0	0	0	1	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0032	7065	1	0	1	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0033	7066	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0034	7065	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0035	7064	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0036	7062	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0037	7065	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0038	7064	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0039	7063	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0040	7065	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0041	7064	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0042	7064	1	0	0	0	0	1	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0043	6936	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0044	7396	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0045	7066	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0046	7065	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0047	7065	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0048	7065	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0049	7065	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0050	7065	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0051	7061	1	1	0	0	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0052	7066	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0053	7065	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0054	7066	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0055	7066	1	0	0	0	0	1	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0056	7073	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0057	7067	1	0	0	0	0	1	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0058	7065	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0059	7065	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0060	7060	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0061	7066	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0062	7066	1	0	0	0	0	1	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0063	7067	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0064	7067	1	0	0	0	1	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0065	7065	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIAP_chrX_123855053_123918972	0/0	t0066	7064	1	0	0	1	0	0	copy fasta	XIAP	chrX	123855053	123918972
XIRP1_chr3_39178215_39197595	1/1	t0001	930	239	42	52	108	11	24	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	t0002	930	143	42	26	51	5	19	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	t0003	930	9	8	1	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	t0004	930	3	0	0	3	0	0	copy fasta	XIRP1	chr3	39178215	39197595