JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XIRP1_chr3_39178215_39197595	0/0	t0005	930	3	0	0	3	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	t0006	930	1	0	0	1	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	t0007	930	1	0	0	0	0	1	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	t0008	930	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	t0009	930	1	1	0	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP1_chr3_39178215_39197595	0/0	t0010	930	1	0	1	0	0	0	copy fasta	XIRP1	chr3	39178215	39197595
XIRP2_chr2_166883480_167264753	0/0	t0001	2033	89	37	6	30	1	15	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0002	2033	25	6	2	16	0	1	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0003	2033	20	0	0	20	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0004	2033	20	4	1	12	1	2	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0005	2033	13	10	0	0	0	3	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0006	2033	9	3	1	4	0	1	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0007	2032	4	3	1	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0008	2033	2	0	0	2	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0009	2032	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0010	2032	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0011	2032	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0012	2033	1	0	0	0	0	1	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0013	2033	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0014	2033	1	0	1	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0015	2033	1	0	0	0	0	1	copy fasta	XIRP2	chr2	166883480	167264753
XIRP2_chr2_166883480_167264753	0/0	t0016	2033	1	1	0	0	0	0	copy fasta	XIRP2	chr2	166883480	167264753
XKR3_chr22_16778480_16830411	0/0	t0001	271	222	59	22	115	4	22	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	t0002	271	105	26	26	38	3	12	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	t0003	271	89	5	19	58	1	6	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	t0004	271	1	0	0	1	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR3_chr22_16778480_16830411	0/0	t0005	271	1	0	1	0	0	0	copy fasta	XKR3	chr22	16778480	16830411
XKR4_chr8_55097028_55547054	0/0	t0001	18290	3	0	0	3	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0002	18276	3	3	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0003	18272	3	0	0	3	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0004	18285	3	3	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0005	18289	2	0	0	1	0	1	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0006	18284	2	0	0	2	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0007	18285	2	0	1	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0008	18281	2	0	0	1	0	1	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0009	18290	2	2	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0010	18272	2	0	1	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0011	18283	2	2	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0012	18278	2	0	2	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0013	18270	2	0	1	0	1	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0014	18277	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0015	18276	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0016	18288	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0017	18289	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0018	18296	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0019	18288	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0020	18291	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0021	18286	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0022	18284	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0023	18284	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054