JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XKR4_chr8_55097028_55547054	0/0	t0024	18285	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0025	18281	1	0	0	0	0	1	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0026	18282	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0027	18282	1	0	0	0	0	1	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0028	18275	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0029	18271	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0030	18289	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0031	18289	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0032	18286	1	0	0	0	0	1	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0033	18290	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0034	18281	1	0	0	0	1	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0035	18287	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0036	18268	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0037	18277	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0038	18275	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0039	18289	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0040	18286	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0041	18276	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0042	18277	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0043	18286	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0044	18272	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0045	18268	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0046	18264	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0047	18264	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0048	18265	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0049	18259	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0050	18260	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0051	18260	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0052	18288	1	0	0	0	1	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0053	18284	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0054	18281	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0055	18295	1	0	0	0	0	1	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0056	18293	1	0	0	0	0	1	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0057	18291	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0058	18297	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0059	18297	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0060	18297	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0061	18298	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0062	18290	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0063	18293	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0064	18293	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0065	18293	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0066	18292	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0067	18293	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0068	18291	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0069	18294	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0070	18294	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0071	18294	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0072	18289	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0073	18289	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054