JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XKR4_chr8_55097028_55547054	0/0	t0074	18290	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0075	18290	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0076	18290	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0077	18269	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0078	18286	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0079	18279	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0080	18280	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0081	18290	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0082	18289	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0083	18289	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0084	18288	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0085	18285	1	0	0	0	1	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0086	18284	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0087	18281	1	0	0	0	0	1	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0088	18280	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0089	18290	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0090	18280	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0091	18277	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0092	18277	1	0	0	0	1	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0093	18278	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0094	18275	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0095	18274	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0096	18276	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0097	18277	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0098	18277	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0099	18278	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0100	18277	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0101	18277	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0102	18266	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0103	18277	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0104	18277	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0105	18272	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0106	18272	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0107	18273	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0108	18273	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0109	18274	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0110	18270	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0111	18268	1	0	0	0	0	1	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0112	18268	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0113	18268	1	0	0	0	1	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0114	18269	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0115	18270	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0116	18273	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0117	18268	1	0	1	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0118	18286	1	0	0	0	0	1	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0119	18256	1	1	0	0	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0120	18275	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0121	18288	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0122	18280	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054
XKR4_chr8_55097028_55547054	0/0	t0123	18284	1	0	0	1	0	0	copy fasta	XKR4	chr8	55097028	55547054