JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C19orf25_chr19_1468201_1484215	0/0	t0004	1887	11	11	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0005	1887	10	10	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0006	1887	5	0	5	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0007	1887	4	4	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0008	1885	4	2	2	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0009	1886	3	0	2	0	0	1	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0010	1886	3	1	2	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0011	1887	3	0	0	2	0	1	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0012	1887	3	3	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0013	1886	2	0	1	0	0	1	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0014	1887	2	2	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0015	1887	2	0	1	0	1	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0016	1887	2	0	0	2	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0017	1887	2	2	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0018	1887	2	0	0	2	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0019	1887	2	0	2	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0020	1887	1	0	0	1	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0021	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0022	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0023	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0024	1887	1	0	1	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0025	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0026	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0027	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0028	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0029	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0030	1887	1	0	0	1	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0031	1887	1	0	0	0	0	1	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0032	1887	1	0	0	1	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0033	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0034	1887	1	0	0	1	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0035	1887	1	0	0	0	0	1	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0036	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0037	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0038	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0039	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0040	1887	1	0	1	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0041	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0042	1887	1	1	0	0	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf25_chr19_1468201_1484215	0/0	t0043	1887	1	0	0	1	0	0	copy fasta	C19orf25	chr19	1468201	1484215
C19orf33_chr19_38299251_38310006	1/1	t0001	54	238	66	42	95	14	19	copy fasta	C19orf33	chr19	38299251	38310006
C19orf33_chr19_38299251_38310006	0/0	t0002	54	168	20	34	93	2	19	copy fasta	C19orf33	chr19	38299251	38310006
C19orf38_chr19_10843415_10874790	1/1	t0001	518	379	79	74	174	8	42	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	t0002	518	3	3	0	0	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	t0003	518	1	0	0	1	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf38_chr19_10843415_10874790	0/0	t0004	518	1	0	0	1	0	0	copy fasta	C19orf38	chr19	10843415	10874790
C19orf44_chr19_16491394_16526352	0/1	t0001	1372	107	7	36	40	8	15	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0002	1372	72	21	25	16	2	8	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0003	1372	53	35	3	7	1	7	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	1/0	t0004	1372	50	0	4	42	0	3	copy fasta	C19orf44	chr19	16491394	16526352