JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XKR6_chr8_10891045_11206833	0/0	t0019	2402	2	2	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0020	2405	2	0	0	0	1	1	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0021	2405	2	2	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0022	2404	2	1	0	0	0	1	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0023	2401	2	2	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0024	2401	2	2	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0025	2404	1	0	1	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0026	2402	1	0	0	0	0	1	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0027	2402	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0028	2405	1	0	0	0	0	1	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0029	2405	1	0	0	1	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0030	2402	1	0	1	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0031	2404	1	0	1	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0032	2403	1	0	0	0	0	1	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0033	2402	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0034	2405	1	0	0	1	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0035	2407	1	0	0	0	0	1	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0036	2402	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0037	2404	1	0	0	0	0	1	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0038	2405	1	0	1	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0039	2403	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0040	2406	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0041	2403	1	0	1	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0042	2401	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0043	2401	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0044	2402	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0045	2404	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0046	2405	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0047	2400	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0048	2400	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0049	2402	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0050	2403	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0051	2405	1	0	0	0	0	1	copy fasta	XKR6	chr8	10891045	11206833
XKR6_chr8_10891045_11206833	0/0	t0052	2403	1	1	0	0	0	0	copy fasta	XKR6	chr8	10891045	11206833
XKR7_chr20_31963151_32008387	1/1	t0001	5956	126	6	35	57	5	21	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0002	5955	17	11	3	1	1	1	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0003	5956	14	10	3	0	1	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0004	5958	13	3	3	4	0	3	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0005	5957	12	3	4	4	0	1	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0006	5956	9	9	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0007	5957	8	8	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0008	5959	7	0	2	4	1	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0009	5960	7	1	1	1	0	4	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0010	5956	7	3	2	0	1	1	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0011	5955	6	5	1	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0012	5956	5	0	0	5	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0013	5956	4	0	3	0	1	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0014	5943	4	4	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0015	5950	3	0	3	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0016	5958	3	3	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387