JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XKR7_chr20_31963151_32008387	0/0	t0017	5956	3	3	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0018	5957	2	2	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0019	5959	2	1	0	1	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0020	5956	2	2	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0021	5956	2	2	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0022	5958	2	2	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0023	5957	2	0	1	1	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0024	5956	2	0	1	0	1	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0025	5956	2	2	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0026	5956	2	0	0	2	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0027	5956	2	0	0	0	1	1	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0028	5958	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0029	5960	1	0	1	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0030	5957	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0031	5956	1	0	0	0	0	1	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0032	5958	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0033	5958	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0034	5959	1	0	1	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0035	5959	1	0	1	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0036	5956	1	0	1	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0037	5957	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0038	5958	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0039	5958	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0040	5956	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0041	5956	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0042	5955	1	0	1	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0043	5955	1	0	0	0	0	1	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0044	5955	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0045	5956	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0046	5956	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0047	5956	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0048	5957	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0049	5957	1	0	0	0	0	1	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0050	5959	1	0	1	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0051	5957	1	0	1	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0052	5956	1	0	0	0	0	1	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0053	5956	1	0	0	1	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0054	5956	1	0	0	1	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0055	5956	1	0	0	1	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0056	5956	1	0	0	1	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0057	5956	1	0	1	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0058	5956	1	0	1	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0059	5956	1	0	1	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0060	5957	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0061	5956	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0062	5938	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR7_chr20_31963151_32008387	0/0	t0063	5956	1	1	0	0	0	0	copy fasta	XKR7	chr20	31963151	32008387
XKR8_chr1_27954973_27973093	0/1	t0001	991	328	54	71	145	18	39	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	1/0	t0002	991	64	14	3	40	0	6	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	t0003	989	14	0	2	12	0	0	copy fasta	XKR8	chr1	27954973	27973093