JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XKR8_chr1_27954973_27973093	0/0	t0004	991	13	11	2	0	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	t0005	991	9	8	1	0	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	t0006	991	5	4	1	0	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	t0007	991	2	0	0	0	0	2	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	t0008	991	1	1	0	0	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	t0009	991	1	0	0	1	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	t0010	991	1	1	0	0	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	t0011	991	1	0	0	1	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	t0012	991	1	0	0	0	0	1	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	t0013	991	1	0	0	1	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR8_chr1_27954973_27973093	0/0	t0014	991	1	1	0	0	0	0	copy fasta	XKR8	chr1	27954973	27973093
XKR9_chr8_70664339_70740942	1/0	t0001	2079	108	22	13	56	4	12	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/1	t0002	2079	72	15	14	31	4	7	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0003	2079	57	0	12	43	0	2	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0004	2079	36	20	11	1	1	3	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0005	2079	9	2	5	0	0	2	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0006	2079	5	1	1	0	1	2	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0007	2079	5	5	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0008	2076	4	4	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0009	2078	4	4	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0010	2075	3	3	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0011	2079	3	0	0	3	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0012	2075	2	2	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0013	2079	2	2	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0014	2079	1	0	0	1	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0015	2072	1	1	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0016	2076	1	1	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0017	2079	1	1	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0018	2079	1	1	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0019	2079	1	0	0	1	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0020	2078	1	0	0	1	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0021	2079	1	0	0	1	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0022	2079	1	1	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0023	2079	1	1	0	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0024	2079	1	0	1	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKR9_chr8_70664339_70740942	0/0	t0025	2079	1	0	1	0	0	0	copy fasta	XKR9	chr8	70664339	70740942
XKRX_chrX_100908445_100933917	1/1	t0001	1507	271	53	48	127	11	30	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	t0002	1505	8	8	0	0	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	t0003	1507	6	6	0	0	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	t0004	1508	5	4	1	0	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	t0005	1507	3	3	0	0	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	t0006	1522	2	2	0	0	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	t0007	1507	1	0	0	1	0	0	copy fasta	XKRX	chrX	100908445	100933917
XKRX_chrX_100908445_100933917	0/0	t0008	1507	1	0	1	0	0	0	copy fasta	XKRX	chrX	100908445	100933917
XK_chrX_37680791_37737130	1/1	t0001	3840	130	8	24	72	5	19	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0002	3840	30	10	8	5	0	7	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0003	3840	15	15	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0004	3840	10	7	3	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0005	3840	5	5	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0006	3840	4	4	0	0	0	0	copy fasta	XK	chrX	37680791	37737130