JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XK_chrX_37680791_37737130	0/0	t0007	3840	3	3	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0008	3840	3	3	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0009	3840	2	2	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0010	3840	2	2	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0011	3840	2	2	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0012	3840	2	2	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0013	3840	2	1	1	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0014	3840	1	1	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0015	3840	1	0	0	0	0	1	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0016	3840	1	0	0	1	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0017	3840	1	0	0	1	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0018	3840	1	0	0	1	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0019	3840	1	1	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0020	3840	1	1	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0021	3840	1	1	0	0	0	0	copy fasta	XK	chrX	37680791	37737130
XK_chrX_37680791_37737130	0/0	t0022	3840	1	0	1	0	0	0	copy fasta	XK	chrX	37680791	37737130
XNDC1N_chr11_71875704_71933594	1/1	t0001	4088	188	30	43	89	6	18	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0002	4088	57	15	8	28	2	4	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0003	4087	12	0	6	3	0	3	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0004	4088	10	10	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0005	4086	9	8	1	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0006	4089	8	8	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0007	4088	6	0	2	2	0	2	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0008	4086	5	5	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0009	4088	5	0	0	5	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0010	4088	5	0	0	0	0	5	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0011	4089	4	4	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0012	4088	3	0	0	3	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0013	4089	3	0	1	2	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0014	4088	3	0	0	3	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0015	4088	3	1	1	0	0	1	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0016	4086	2	2	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0017	4088	2	2	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0018	4088	2	2	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0019	4088	2	0	0	2	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0020	4086	1	1	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0021	4086	1	1	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0022	4088	1	0	0	0	0	1	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0023	4088	1	1	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0024	4088	1	0	1	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0025	4088	1	0	0	1	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0026	4088	1	1	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0027	4087	1	0	1	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XNDC1N_chr11_71875704_71933594	0/0	t0028	4087	1	1	0	0	0	0	copy fasta	XNDC1N	chr11	71875704	71933594
XPA_chr9_97669909_97702340	1/1	t0001	579	170	13	24	101	5	25	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	t0002	579	160	29	40	64	9	18	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	t0003	579	40	6	12	21	0	1	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	t0004	579	25	24	1	0	0	0	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	t0005	579	15	14	1	0	0	0	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	t0006	579	2	2	0	0	0	0	copy fasta	XPA	chr9	97669909	97702340