JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XPA_chr9_97669909_97702340	0/0	t0007	579	1	1	0	0	0	0	copy fasta	XPA	chr9	97669909	97702340
XPA_chr9_97669909_97702340	0/0	t0008	579	1	1	0	0	0	0	copy fasta	XPA	chr9	97669909	97702340
XPC_chr3_14140147_14183601	0/0	t0001	828	160	32	28	82	3	15	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	t0002	828	82	11	5	63	0	3	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/1	t0003	828	77	32	22	4	5	13	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	t0004	828	23	1	14	0	5	3	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	1/0	t0005	828	15	6	4	2	1	1	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	t0006	828	5	5	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	t0007	828	4	4	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	t0008	828	2	2	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	t0009	828	1	1	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	t0010	828	1	0	0	0	0	1	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	t0011	828	1	0	1	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	t0012	828	1	0	0	1	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	t0013	828	1	1	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPC_chr3_14140147_14183601	0/0	t0014	828	1	1	0	0	0	0	copy fasta	XPC	chr3	14140147	14183601
XPNPEP1_chr10_109859766_109928511	1/1	t0001	497	319	72	56	151	10	28	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	t0002	497	23	17	2	0	0	4	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	t0003	497	1	1	0	0	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP1_chr10_109859766_109928511	0/0	t0004	497	1	0	0	1	0	0	copy fasta	XPNPEP1	chr10	109859766	109928511
XPNPEP2_chrX_129733979_129774536	1/1	t0001	1287	124	5	37	50	8	22	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0002	1287	57	25	9	17	0	6	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0003	1287	44	8	0	34	0	2	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0004	1287	23	3	1	19	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0005	1287	15	15	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0006	1287	8	3	1	3	0	1	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0007	1287	7	7	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0008	1287	6	4	2	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0009	1287	4	4	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0010	1287	3	0	0	3	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0011	1287	3	3	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0012	1287	3	0	0	3	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0013	1287	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0014	1283	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0015	1286	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0016	1287	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0017	1286	1	1	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0018	1287	1	0	0	0	1	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0019	1287	1	0	0	0	0	1	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0020	1291	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0021	1288	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0022	1287	1	1	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0023	1287	1	1	0	0	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0024	1287	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP2_chrX_129733979_129774536	0/0	t0025	1292	1	0	0	1	0	0	copy fasta	XPNPEP2	chrX	129733979	129774536
XPNPEP3_chr22_40852148_40937815	0/0	t0001	6416	60	5	10	31	4	10	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	1/0	t0002	6415	55	12	16	12	4	10	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0003	6415	22	17	2	3	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0004	6414	17	0	0	17	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0005	6414	10	10	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815