JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XPNPEP3_chr22_40852148_40937815	0/0	t0006	6417	7	1	2	3	0	1	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0007	6416	6	1	2	3	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0008	6413	6	4	2	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0009	6416	4	3	1	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0010	6415	4	0	0	4	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0011	6401	4	3	1	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0012	6415	3	1	1	0	1	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0013	6415	3	3	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0014	6416	3	1	0	0	0	2	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0015	6415	2	0	0	2	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0016	6415	2	0	0	2	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0017	6414	2	2	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/1	t0018	6415	2	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0019	6415	2	2	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0020	6415	2	0	0	0	0	2	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0021	6414	2	2	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0022	6415	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0023	6415	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0024	6416	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0025	6415	1	0	1	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0026	6418	1	0	0	0	0	1	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0027	6416	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0028	6415	1	0	0	0	0	1	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0029	6415	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0030	6415	1	0	1	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0031	6414	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0032	6415	1	0	0	0	1	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0033	6415	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0034	6416	1	0	0	0	0	1	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0035	6415	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0036	6417	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0037	6416	1	0	1	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0038	6416	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0039	6417	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0040	6417	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0041	6413	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0042	6414	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0043	6414	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0044	6414	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0045	6416	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0046	6414	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0047	6414	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0048	6414	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0049	6414	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0050	6415	1	1	0	0	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPNPEP3_chr22_40852148_40937815	0/0	t0051	6416	1	0	0	1	0	0	copy fasta	XPNPEP3	chr22	40852148	40937815
XPO1_chr2_61472849_61543356	1/0	t0001	1773	40	11	7	18	1	2	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0002	1774	27	5	3	13	2	4	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0003	1765	25	1	4	20	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0004	1775	14	5	2	6	1	0	copy fasta	XPO1	chr2	61472849	61543356