JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XPO1_chr2_61472849_61543356	0/0	t0005	1777	13	9	2	1	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0006	1778	13	6	1	5	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0007	1776	13	2	2	8	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0008	1766	12	1	3	8	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0009	1781	11	0	2	7	1	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0010	1780	11	3	3	1	3	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0011	1779	9	0	0	5	2	2	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0012	1779	9	1	1	6	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0013	1779	8	6	2	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0014	1775	7	0	1	6	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0015	1777	5	0	2	3	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0016	1776	5	4	1	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0017	1772	5	2	0	2	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0018	1781	4	0	3	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/1	t0019	1773	4	1	2	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0020	1771	4	1	2	0	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0021	1780	4	1	0	3	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0022	1782	4	2	2	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0023	1773	3	0	3	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0024	1782	3	0	0	2	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0025	1780	3	1	1	0	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0026	1781	3	3	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0027	1769	3	3	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0028	1783	2	0	0	0	0	2	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0029	1779	2	0	2	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0030	1775	2	1	0	0	1	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0031	1773	2	0	1	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0032	1771	2	0	0	2	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0033	1772	2	0	0	2	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0034	1782	2	0	1	0	1	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0035	1776	2	0	0	2	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0036	1781	2	2	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0037	1784	2	2	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0038	1778	2	0	0	2	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0039	1778	1	1	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0040	1775	1	1	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0041	1775	1	0	1	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0042	1785	1	0	0	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0043	1783	1	0	0	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0044	1775	1	0	1	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0045	1769	1	1	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0046	1767	1	0	0	0	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0047	1768	1	1	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0048	1784	1	0	0	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0049	1780	1	0	0	0	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0050	1778	1	0	0	0	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0051	1774	1	0	0	0	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0052	1774	1	0	1	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0053	1772	1	0	1	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0054	1783	1	1	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356