JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XPO1_chr2_61472849_61543356	0/0	t0055	1783	1	1	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0056	1779	1	1	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0057	1771	1	1	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0058	1773	1	0	0	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0059	1765	1	0	0	0	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0060	1761	1	0	1	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0061	1775	1	0	0	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0062	1771	1	0	0	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0063	1765	1	0	0	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0064	1779	1	0	1	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0065	1777	1	0	0	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0066	1773	1	0	0	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0067	1784	1	1	0	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0068	1772	1	0	0	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0069	1770	1	0	1	0	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0070	1766	1	0	0	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0071	1773	1	0	0	0	0	1	copy fasta	XPO1	chr2	61472849	61543356
XPO1_chr2_61472849_61543356	0/0	t0072	1765	1	0	0	1	0	0	copy fasta	XPO1	chr2	61472849	61543356
XPO4_chr13_20772329_20907746	0/1	t0001	6402	95	17	20	40	3	14	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0002	6402	73	5	17	39	6	6	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0003	6402	32	19	8	0	2	3	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0004	6402	19	1	4	0	5	9	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0005	6402	11	9	1	0	0	1	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0006	6402	8	8	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0007	6403	8	7	1	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0008	6402	6	6	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0009	6402	4	1	1	0	0	2	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0010	6402	4	3	1	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	1/0	t0011	6402	3	2	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0012	6402	3	0	0	3	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0013	6402	2	1	1	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0014	6402	2	1	1	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0015	6402	2	2	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0016	6402	2	2	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0017	6402	2	0	1	0	0	1	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0018	6402	2	0	2	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0019	6402	2	2	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0020	6403	1	1	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0021	6402	1	0	0	0	0	1	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0022	6402	1	1	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0023	6402	1	1	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0024	6402	1	1	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0025	6402	1	0	0	1	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0026	6402	1	0	0	1	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0027	6402	1	0	0	0	0	1	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0028	6402	1	1	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0029	6402	1	0	1	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0030	6403	1	0	1	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO4_chr13_20772329_20907746	0/0	t0031	6402	1	1	0	0	0	0	copy fasta	XPO4	chr13	20772329	20907746
XPO5_chr6_43517334_43581038	1/1	t0001	1709	124	17	24	63	4	14	copy fasta	XPO5	chr6	43517334	43581038