JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XPO5_chr6_43517334_43581038	0/0	t0002	1709	48	35	3	6	0	4	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	t0003	1709	32	7	15	2	1	7	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	t0004	1709	13	13	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	t0005	1709	10	1	2	1	3	3	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	t0006	1709	9	9	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	t0007	1709	5	5	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	t0008	1709	2	2	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	t0009	1709	2	2	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO5_chr6_43517334_43581038	0/0	t0010	1709	1	1	0	0	0	0	copy fasta	XPO5	chr6	43517334	43581038
XPO6_chr16_28092976_28216965	1/1	t0001	1160	199	47	38	79	14	19	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0002	1160	59	14	8	31	0	6	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0003	1160	10	0	1	8	0	1	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0004	1160	9	8	1	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0005	1160	9	9	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0006	1160	7	6	1	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0007	1160	5	5	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0008	1160	2	0	0	2	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0009	1160	2	0	2	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0010	1160	1	1	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0011	1160	1	1	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0012	1160	1	1	0	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0013	1160	1	0	0	0	0	1	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0014	1160	1	0	0	0	0	1	copy fasta	XPO6	chr16	28092976	28216965
XPO6_chr16_28092976_28216965	0/0	t0015	1160	1	0	1	0	0	0	copy fasta	XPO6	chr16	28092976	28216965
XPO7_chr8_21914662_22011585	0/1	t0001	1607	183	52	36	68	10	16	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	1/0	t0002	1607	126	19	28	62	2	14	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	t0003	1616	8	0	0	8	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	t0004	1608	7	2	0	5	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	t0005	1607	7	7	0	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	t0006	1607	3	3	0	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	t0007	1607	2	2	0	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	t0008	1607	1	0	0	0	0	1	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	t0009	1607	1	1	0	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	t0010	1607	1	0	0	1	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	t0011	1607	1	0	0	0	0	1	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	t0012	1607	1	1	0	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPO7_chr8_21914662_22011585	0/0	t0013	1607	1	1	0	0	0	0	copy fasta	XPO7	chr8	21914662	22011585
XPOT_chr12_64399392_64456125	0/1	t0001	3483	108	20	17	53	5	12	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0002	3484	57	11	9	29	0	8	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0003	3483	53	8	5	30	3	7	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	1/0	t0004	3482	45	11	6	19	1	7	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0005	3485	22	5	4	13	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0006	3483	21	8	5	3	2	3	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0007	3483	18	2	0	16	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0008	3484	8	3	1	4	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0009	3483	5	5	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0010	3483	4	4	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0011	3484	3	0	0	3	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0012	3483	3	2	0	0	0	1	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0013	3483	3	0	0	3	0	0	copy fasta	XPOT	chr12	64399392	64456125