JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C19orf44_chr19_16491394_16526352	0/0	t0005	1372	14	13	1	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0006	1372	12	2	1	5	1	3	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0007	1372	11	9	2	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0008	1372	2	0	0	2	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0009	1372	2	0	0	2	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0010	1372	1	0	1	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0011	1372	1	1	0	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0012	1372	1	0	0	1	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0013	1372	1	1	0	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0014	1372	1	0	1	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0015	1372	1	0	0	1	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf44_chr19_16491394_16526352	0/0	t0016	1372	1	1	0	0	0	0	copy fasta	C19orf44	chr19	16491394	16526352
C19orf47_chr19_40314536_40353397	0/1	t0001	2454	144	28	30	74	7	4	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0002	2454	102	4	20	48	7	23	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0003	2454	44	25	7	9	1	2	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0004	2454	13	0	0	13	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0005	2455	12	11	1	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0006	2455	11	4	0	6	0	1	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0007	2454	10	10	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	1/0	t0008	2454	10	0	1	3	1	4	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0009	2454	7	0	7	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0010	2454	5	0	0	5	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0011	2454	5	4	1	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0012	2454	3	3	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0013	2454	2	2	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0014	2454	2	2	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0015	2455	2	0	0	2	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0016	2454	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0017	2455	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0018	2455	1	0	0	1	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0019	2454	1	0	0	1	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0020	2454	1	0	1	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0021	2454	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0022	2454	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0023	2454	1	0	0	1	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0024	2454	1	1	0	0	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0025	2454	1	0	0	1	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0026	2454	1	0	0	1	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf47_chr19_40314536_40353397	0/0	t0027	2454	1	0	0	1	0	0	copy fasta	C19orf47	chr19	40314536	40353397
C19orf53_chr19_13769456_13783773	1/1	t0001	598	239	38	50	107	14	28	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	t0002	598	159	28	27	86	2	16	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	t0003	598	14	14	0	0	0	0	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	t0004	598	8	8	0	0	0	0	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	t0005	598	3	3	0	0	0	0	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	t0006	598	3	3	0	0	0	0	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	t0007	598	3	0	0	3	0	0	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	t0008	598	2	2	0	0	0	0	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	t0009	598	2	0	2	0	0	0	copy fasta	C19orf53	chr19	13769456	13783773
C19orf53_chr19_13769456_13783773	0/0	t0010	598	1	0	1	0	0	0	copy fasta	C19orf53	chr19	13769456	13783773
C19orf67_chr19_14076624_14090783	1/1	t0001	367	377	89	69	158	11	48	copy fasta	C19orf67	chr19	14076624	14090783