JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XPOT_chr12_64399392_64456125	0/0	t0014	3484	2	0	1	0	0	1	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0015	3483	2	0	0	2	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0016	3483	2	2	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0017	3484	2	0	0	2	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0018	3485	2	1	0	1	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0019	3484	2	2	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0020	3499	2	0	0	2	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0021	3470	1	1	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0022	3485	1	0	0	1	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0023	3483	1	1	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0024	3484	1	0	0	1	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0025	3484	1	0	0	0	1	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0026	3483	1	0	0	1	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0027	3483	1	0	1	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0028	3482	1	1	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0029	3483	1	0	1	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0030	3483	1	1	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0031	3483	1	1	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0032	3482	1	0	0	1	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0033	3482	1	0	0	1	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0034	3484	1	1	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0035	3483	1	1	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0036	3484	1	1	0	0	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0037	3495	1	0	0	0	0	1	copy fasta	XPOT	chr12	64399392	64456125
XPOT_chr12_64399392_64456125	0/0	t0038	3484	1	0	0	1	0	0	copy fasta	XPOT	chr12	64399392	64456125
XPR1_chr1_180627022_180895279	0/1	t0001	6394	121	22	33	51	3	11	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0002	6715	52	5	14	20	5	8	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0003	6394	40	0	2	35	2	1	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0004	6715	11	10	1	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0005	6715	10	1	1	8	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0006	6390	9	1	6	0	0	2	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0007	6394	7	7	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0008	6394	6	6	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0009	6715	6	5	1	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0010	6394	6	0	0	6	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0011	6394	5	4	1	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0012	6394	5	5	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0013	6394	4	0	0	0	0	4	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	1/0	t0014	6394	3	2	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0015	6394	3	0	1	0	0	2	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0016	6394	3	1	2	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0017	6394	3	3	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0018	6394	3	3	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0019	6394	2	2	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0020	6394	2	2	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0021	6394	2	0	0	2	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0022	6715	2	0	0	2	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0023	6394	2	2	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0024	6394	1	1	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0025	6394	1	0	1	0	0	0	copy fasta	XPR1	chr1	180627022	180895279