JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XPR1_chr1_180627022_180895279	0/0	t0026	6394	1	0	0	1	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0027	6394	1	1	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0028	6394	1	1	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0029	6394	1	0	1	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0030	6394	1	1	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0031	6394	1	0	0	1	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0032	6394	1	0	0	1	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0033	6394	1	1	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0034	6394	1	1	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0035	6715	1	1	0	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0036	6715	1	0	1	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0037	6394	1	0	0	0	1	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0038	6715	1	0	1	0	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0039	6715	1	0	0	0	0	1	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0040	6394	1	0	0	1	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0041	6715	1	0	0	0	0	1	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0042	6715	1	0	0	1	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0043	6715	1	0	0	1	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0044	6715	1	0	0	1	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0045	6715	1	0	0	1	0	0	copy fasta	XPR1	chr1	180627022	180895279
XPR1_chr1_180627022_180895279	0/0	t0046	6390	1	0	0	0	1	0	copy fasta	XPR1	chr1	180627022	180895279
XRCC1_chr19_43538311_43580527	1/1	t0001	151	161	29	26	74	8	22	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0002	149	70	5	14	44	0	7	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0003	147	57	14	8	24	4	7	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0004	155	43	5	11	22	3	2	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0005	153	42	19	5	10	2	6	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0006	137	23	1	1	17	1	3	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0007	159	6	6	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0008	157	6	4	0	2	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0009	183	2	1	1	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0010	133	2	2	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0011	165	2	0	2	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0012	161	2	0	1	0	0	1	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0013	159	2	0	2	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0014	193	1	1	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0015	187	1	0	1	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0016	171	1	1	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0017	161	1	1	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0018	177	1	1	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0019	139	1	1	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0020	167	1	1	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0021	157	1	1	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0022	151	1	0	0	1	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC1_chr19_43538311_43580527	0/0	t0023	149	1	1	0	0	0	0	copy fasta	XRCC1	chr19	43538311	43580527
XRCC2_chr7_152639776_152681141	0/0	t0001	3922	98	9	21	57	2	9	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0002	3922	57	16	2	36	1	2	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0003	3921	44	3	6	23	2	10	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0004	3929	21	0	4	13	1	3	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0005	3922	16	15	1	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0006	3952	11	0	4	5	0	2	copy fasta	XRCC2	chr7	152639776	152681141