JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XRCC2_chr7_152639776_152681141	0/1	t0007	3923	11	1	6	0	0	3	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0008	3922	10	0	3	0	1	6	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0009	3954	9	1	1	7	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0010	3950	8	0	1	7	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	1/0	t0011	3929	7	5	1	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0012	3922	6	5	1	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0013	3948	5	0	4	0	0	1	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0014	3922	4	0	2	0	0	2	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0015	3929	4	2	2	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0016	3922	3	0	1	1	0	1	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0017	4013	3	3	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0018	3962	3	0	0	3	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0019	3958	3	0	1	2	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0020	3956	3	0	0	3	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0021	3918	3	0	0	3	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0022	3926	3	3	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0023	3918	3	0	2	1	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0024	3924	3	3	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0025	3928	2	2	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0026	3917	2	0	0	2	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0027	3949	2	0	2	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0028	3922	2	2	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0029	3956	2	0	0	2	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0030	3952	2	0	1	1	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0031	3944	2	0	1	1	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0032	3918	2	0	0	2	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0033	3965	2	2	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0034	3959	2	2	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0035	3953	2	0	2	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0036	3924	2	0	2	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0037	3953	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0038	3949	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0039	3922	1	0	0	0	1	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0040	3926	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0041	3921	1	0	0	1	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0042	3921	1	0	0	0	0	1	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0043	4012	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0044	3921	1	0	0	1	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0045	3957	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0046	3952	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0047	3945	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0048	3957	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0049	3956	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0050	3954	1	0	1	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0051	3956	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0052	3952	1	0	1	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0053	3948	1	0	1	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0054	3946	1	0	1	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0055	3954	1	0	0	1	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0056	3948	1	0	0	1	0	0	copy fasta	XRCC2	chr7	152639776	152681141