JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XRCC2_chr7_152639776_152681141	0/0	t0057	3928	1	0	0	1	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0058	3922	1	0	1	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0059	3922	1	0	0	0	0	1	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0060	3953	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0061	3952	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0062	3922	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0063	3922	1	0	0	0	0	1	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0064	3922	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0065	3922	1	0	1	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0066	3955	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0067	3957	1	1	0	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC2_chr7_152639776_152681141	0/0	t0068	3923	1	0	1	0	0	0	copy fasta	XRCC2	chr7	152639776	152681141
XRCC3_chr14_103692617_103720451	1/1	t0001	1527	257	49	61	106	11	28	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0002	1527	101	11	12	60	3	15	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0003	1527	9	8	1	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0004	1497	7	7	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0005	1527	5	0	0	5	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0006	1527	4	4	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0007	1527	3	3	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0008	1527	3	3	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0009	1497	2	0	0	2	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0010	1527	2	2	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0011	1527	1	0	0	0	0	1	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0012	1527	1	0	0	0	0	1	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0013	1527	1	0	1	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0014	1527	1	0	1	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0015	1527	1	0	0	0	0	1	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0016	1527	1	1	0	0	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC3_chr14_103692617_103720451	0/0	t0017	1527	1	0	0	1	0	0	copy fasta	XRCC3	chr14	103692617	103720451
XRCC4_chr5_83072547_83358760	1/1	t0001	598	198	75	33	66	3	19	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	t0002	598	50	3	9	31	0	7	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	t0003	598	4	0	0	4	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	t0004	598	2	0	2	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	t0005	598	2	0	0	0	0	2	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	t0006	598	1	0	0	1	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	t0007	598	1	1	0	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	t0008	598	1	1	0	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	t0009	598	1	1	0	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	t0010	598	1	1	0	0	0	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC4_chr5_83072547_83358760	0/0	t0011	598	1	0	0	0	1	0	copy fasta	XRCC4	chr5	83072547	83358760
XRCC5_chr2_216104348_216211293	0/1	t0001	1181	147	11	37	77	8	13	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	t0002	1181	69	38	8	13	0	10	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	1/0	t0003	1181	57	19	12	15	2	8	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	t0004	1181	53	14	3	24	3	9	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	t0005	1181	7	0	5	2	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	t0006	1181	7	7	0	0	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	t0007	1181	4	4	0	0	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	t0008	1181	3	0	0	0	1	2	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	t0009	1181	2	2	0	0	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	t0010	1181	1	0	1	0	0	0	copy fasta	XRCC5	chr2	216104348	216211293