JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XRCC5_chr2_216104348_216211293	0/0	t0011	1181	1	0	0	1	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC5_chr2_216104348_216211293	0/0	t0012	1181	1	1	0	0	0	0	copy fasta	XRCC5	chr2	216104348	216211293
XRCC6_chr22_41616295_41669041	1/1	t0001	293	312	88	59	113	14	36	copy fasta	XRCC6	chr22	41616295	41669041
XRCC6_chr22_41616295_41669041	0/0	t0002	293	9	0	0	9	0	0	copy fasta	XRCC6	chr22	41616295	41669041
XRCC6_chr22_41616295_41669041	0/0	t0003	293	3	0	3	0	0	0	copy fasta	XRCC6	chr22	41616295	41669041
XRN1_chr3_142301610_142453037	0/0	t0001	4991	122	31	20	57	4	10	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	1/1	t0002	4995	97	3	20	56	5	11	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0003	4993	42	9	7	19	3	4	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0004	4993	9	9	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0005	4995	8	6	2	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0006	4991	7	0	4	0	0	3	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0007	4991	5	5	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0008	4993	4	2	2	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0009	4995	4	4	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0010	4995	4	4	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0011	4995	3	2	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0012	4993	2	2	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0013	4993	2	2	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0014	4993	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0015	4993	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0016	4993	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0017	4993	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0018	4991	1	0	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0019	4995	1	0	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0020	4995	1	0	0	0	1	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0021	4995	1	0	0	1	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0022	4995	1	0	0	1	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0023	4991	1	0	0	1	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0024	4995	1	0	0	0	1	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0025	4995	1	1	0	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0026	4995	1	0	0	1	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0027	4995	1	0	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN1_chr3_142301610_142453037	0/0	t0028	4991	1	0	1	0	0	0	copy fasta	XRN1	chr3	142301610	142453037
XRN2_chr20_21298331_21394825	0/1	t0001	558	195	66	34	71	10	13	copy fasta	XRN2	chr20	21298331	21394825
XRN2_chr20_21298331_21394825	0/0	t0002	558	63	17	5	32	4	5	copy fasta	XRN2	chr20	21298331	21394825
XRN2_chr20_21298331_21394825	1/0	t0003	556	19	3	7	3	0	5	copy fasta	XRN2	chr20	21298331	21394825
XRN2_chr20_21298331_21394825	0/0	t0004	558	1	0	0	0	0	1	copy fasta	XRN2	chr20	21298331	21394825
XRRA1_chr11_74835910_74954091	1/0	t0001	2527	86	8	17	39	6	15	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0002	2527	80	9	11	40	5	15	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/1	t0003	2527	70	7	12	42	3	5	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0004	2527	22	22	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0005	2527	14	0	6	8	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0006	2525	14	8	6	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0007	2528	9	9	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0008	2527	9	9	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0009	2528	7	6	1	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0010	2527	7	7	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0011	2528	5	5	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0012	2527	4	0	0	4	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0013	2527	2	0	0	2	0	0	copy fasta	XRRA1	chr11	74835910	74954091