JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XRRA1_chr11_74835910_74954091	0/0	t0014	2528	2	0	0	1	0	1	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0015	2527	1	0	0	1	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0016	2528	1	0	0	1	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0017	2527	1	0	0	1	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0018	2573	1	0	1	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0019	2527	1	0	0	1	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0020	2527	1	0	0	0	0	1	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0021	2527	1	0	0	1	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0022	2528	1	1	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0023	2527	1	1	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0024	2527	1	0	1	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0025	2527	1	1	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0026	2527	1	0	0	1	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0027	2527	1	0	0	0	0	1	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0028	2527	1	0	1	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XRRA1_chr11_74835910_74954091	0/0	t0029	2527	1	1	0	0	0	0	copy fasta	XRRA1	chr11	74835910	74954091
XXYLT1_chr3_195063284_195276159	1/0	t0001	1533	50	18	17	3	1	10	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/1	t0002	1533	39	8	4	22	1	3	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0003	1537	21	6	3	10	0	2	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0004	1542	15	0	2	11	1	1	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0005	1538	10	0	3	5	1	1	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0006	1536	7	7	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0007	1540	5	4	0	1	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0008	1541	4	2	0	2	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0009	1532	4	3	0	1	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0010	1531	3	3	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0011	1533	3	2	1	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0012	1533	3	3	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0013	1532	3	3	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0014	1537	2	2	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0015	1534	2	2	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0016	1538	2	0	0	0	0	2	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0017	1534	2	2	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0018	1536	2	2	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0019	1533	2	0	0	0	0	2	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0020	1534	2	2	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0021	1533	2	0	1	0	0	1	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0022	1532	2	1	1	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0023	1542	2	0	0	2	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0024	1535	1	1	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0025	1534	1	1	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0026	1537	1	1	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0027	1534	1	1	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0028	1537	1	1	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0029	1540	1	1	0	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0030	1533	1	0	0	0	0	1	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0031	1534	1	0	1	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0032	1532	1	0	0	1	0	0	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0033	1533	1	0	0	0	0	1	copy fasta	XXYLT1	chr3	195063284	195276159
XXYLT1_chr3_195063284_195276159	0/0	t0034	1532	1	0	1	0	0	0	copy fasta	XXYLT1	chr3	195063284	195276159