JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XYLB_chr3_38341785_38419985	0/1	t0001	2057	97	12	18	42	7	17	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	1/0	t0002	2057	94	5	22	45	3	18	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0003	2057	61	44	15	1	0	1	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0004	2057	45	8	6	26	0	5	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0005	2054	29	0	8	20	0	1	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0006	2057	11	9	2	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0007	2054	6	5	1	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0008	2058	4	4	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0009	2057	2	2	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0010	2054	2	2	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0011	2057	1	0	0	1	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0012	2057	1	1	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0013	2057	1	0	0	1	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0014	2057	1	0	0	1	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0015	2057	1	0	0	1	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0016	2057	1	1	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLB_chr3_38341785_38419985	0/0	t0017	2057	1	1	0	0	0	0	copy fasta	XYLB	chr3	38341785	38419985
XYLT1_chr16_17096769_17475960	0/0	t0001	7331	10	0	4	4	1	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0002	7329	8	1	3	1	0	3	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0003	7334	7	2	2	1	0	2	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0004	7309	6	6	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0005	7332	5	0	1	2	0	2	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0006	7330	5	1	4	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0007	7326	3	3	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0008	7333	3	0	3	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0009	7309	2	2	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0010	7325	2	0	0	0	2	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0011	7323	2	0	1	1	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0012	7325	2	2	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0013	7326	2	2	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0014	7326	2	2	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0015	7332	2	2	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0016	7331	2	1	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0017	7329	2	0	2	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0018	7313	2	0	2	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0019	7338	2	2	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0020	7327	2	2	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0021	7334	2	1	0	0	1	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0022	7331	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0023	7315	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0024	7315	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0025	7329	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0026	7303	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0027	7325	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0028	7325	1	0	0	0	1	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0029	7325	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0030	7325	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0031	7325	1	0	0	0	1	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0032	7306	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0033	7329	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960