JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XYLT1_chr16_17096769_17475960	0/0	t0034	7334	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0035	7335	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0036	7334	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0037	7332	1	0	0	1	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/1	t0038	7334	1	0	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0039	7334	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0040	7334	1	0	0	1	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0041	7341	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0042	7329	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0043	7331	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0044	7309	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0045	7309	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0046	7309	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0047	7325	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0048	7331	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0049	7329	1	0	0	1	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0050	7331	1	0	0	0	1	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0051	7331	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0052	7309	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0053	7329	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0054	7331	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0055	7329	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0056	7331	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0057	7331	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0058	7331	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0059	7331	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0060	7332	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0061	7331	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0062	7314	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0063	7312	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0064	7335	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0065	7334	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0066	7334	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0067	7334	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0068	7355	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0069	7337	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0070	7315	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0071	7337	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0072	7335	1	0	0	0	1	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0073	7343	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0074	7327	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0075	7303	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0076	7319	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0077	7323	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0078	7323	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0079	7309	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0080	7331	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0081	7331	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0082	7312	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0083	7335	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960