JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
XYLT1_chr16_17096769_17475960	0/0	t0084	7335	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0085	7334	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0086	7334	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0087	7334	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0088	7308	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0089	7315	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0090	7337	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0091	7335	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0092	7340	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0093	7344	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0094	7341	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0095	7350	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0096	7327	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0097	7352	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0098	7352	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0099	7336	1	1	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0100	7367	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0101	7368	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0102	7356	1	0	1	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	0/0	t0103	7368	1	0	0	0	0	1	copy fasta	XYLT1	chr16	17096769	17475960
XYLT1_chr16_17096769_17475960	1/0	t0104	7091	1	0	0	0	0	0	copy fasta	XYLT1	chr16	17096769	17475960
XYLT2_chr17_50341126_50366185	0/1	t0001	911	172	23	30	84	5	29	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0002	911	48	1	20	19	4	4	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0003	915	35	7	15	4	3	6	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0004	911	23	23	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	1/0	t0005	910	18	14	3	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0006	914	17	7	4	1	3	2	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0007	910	13	0	2	9	1	1	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0008	908	7	5	1	0	0	1	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0009	911	5	1	0	4	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0010	910	4	4	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0011	910	3	0	1	2	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0012	915	2	0	1	0	0	1	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0013	910	2	2	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0014	911	2	2	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0015	910	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0016	911	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0017	911	1	0	0	1	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0018	911	1	1	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0019	911	1	0	0	0	0	1	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0020	915	1	0	0	0	0	1	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0021	910	1	1	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0022	910	1	1	0	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
XYLT2_chr17_50341126_50366185	0/0	t0023	911	1	0	1	0	0	0	copy fasta	XYLT2	chr17	50341126	50366185
YAE1_chr7_39561404_39577881	1/1	t0001	191	424	84	76	198	18	46	copy fasta	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	t0002	191	14	12	2	0	0	0	copy fasta	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	t0003	191	10	0	0	10	0	0	copy fasta	YAE1	chr7	39561404	39577881
YAE1_chr7_39561404_39577881	0/0	t0004	191	2	0	0	2	0	0	copy fasta	YAE1	chr7	39561404	39577881
YAF2_chr12_42152104_42243248	1/1	t0001	3554	149	31	33	67	8	8	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0002	3554	118	24	11	65	3	15	copy fasta	YAF2	chr12	42152104	42243248