JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YAF2_chr12_42152104_42243248	0/0	t0003	3556	29	6	6	16	0	1	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0004	3554	16	0	1	11	0	4	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0005	3554	10	0	9	0	1	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0006	3546	7	0	0	0	0	7	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0007	3554	6	0	2	4	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0008	3554	5	4	1	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0009	3556	3	2	1	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0010	3554	2	2	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0011	3554	2	2	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0012	3556	2	2	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0013	3556	2	2	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0014	3554	2	0	2	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0015	3554	2	2	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0016	3554	1	0	1	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0017	3562	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0018	3562	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0019	3562	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0020	3554	1	0	0	1	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0021	3554	1	0	1	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0022	3554	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0023	3556	1	0	0	1	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0024	3554	1	0	0	1	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0025	3554	1	0	0	0	0	1	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0026	3554	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0027	3556	1	0	0	1	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0028	3556	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0029	3556	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0030	3554	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0031	3554	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0032	3554	1	0	0	1	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0033	3554	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAF2_chr12_42152104_42243248	0/0	t0034	3556	1	1	0	0	0	0	copy fasta	YAF2	chr12	42152104	42243248
YAP1_chr11_102105447_102238424	0/0	t0001	3887	80	19	13	40	3	5	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0002	3887	77	11	14	50	0	2	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	1/0	t0003	3887	68	17	18	20	2	10	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0004	3886	20	8	5	1	0	6	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0005	3887	17	6	4	5	1	1	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0006	3886	8	0	0	8	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0007	3887	6	6	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0008	3887	4	0	0	3	0	1	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0009	3888	3	0	3	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0010	3887	3	3	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0011	3887	2	1	0	1	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0012	3887	2	2	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0013	3887	2	2	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0014	3887	2	2	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0015	3887	2	1	1	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0016	3886	2	2	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/1	t0017	3887	2	0	1	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0018	3887	2	0	0	2	0	0	copy fasta	YAP1	chr11	102105447	102238424