JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C19orf67_chr19_14076624_14090783	0/0	t0002	368	5	0	4	0	1	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	t0003	367	4	4	0	0	0	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	t0004	367	2	0	0	0	0	2	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	t0005	367	2	1	1	0	0	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	t0006	367	1	0	0	1	0	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	t0007	367	1	1	0	0	0	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	t0008	367	1	1	0	0	0	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf67_chr19_14076624_14090783	0/0	t0009	367	1	0	0	1	0	0	copy fasta	C19orf67	chr19	14076624	14090783
C19orf73_chr19_49113402_49124143	1/1	t0001	353	373	90	72	147	16	46	copy fasta	C19orf73	chr19	49113402	49124143
C19orf73_chr19_49113402_49124143	0/0	t0002	353	1	0	0	1	0	0	copy fasta	C19orf73	chr19	49113402	49124143
C19orf81_chr19_50644445_50664306	1/1	t0001	165	407	100	82	159	18	46	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	t0002	165	8	0	0	8	0	0	copy fasta	C19orf81	chr19	50644445	50664306
C19orf81_chr19_50644445_50664306	0/0	t0003	165	1	0	0	1	0	0	copy fasta	C19orf81	chr19	50644445	50664306
C19orf84_chr19_51383289_51395591	1/0	t0001	775	171	35	44	56	11	24	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/1	t0002	775	104	2	23	61	3	14	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0003	775	96	8	11	70	1	6	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0004	775	47	38	6	0	1	2	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0005	775	5	5	0	0	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0006	775	5	5	0	0	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0007	775	5	0	0	5	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0008	775	4	0	2	0	2	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0009	775	2	2	0	0	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0010	775	2	0	2	0	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0011	775	1	1	0	0	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0012	775	1	1	0	0	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0013	775	1	1	0	0	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0014	775	1	1	0	0	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf84_chr19_51383289_51395591	0/0	t0015	775	1	1	0	0	0	0	copy fasta	C19orf84	chr19	51383289	51395591
C19orf85_chr19_55458001_55469751	1/1	t0001	669	398	92	71	167	18	48	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	t0002	669	1	0	1	0	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	t0003	669	1	1	0	0	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	t0004	669	1	1	0	0	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C19orf85_chr19_55458001_55469751	0/0	t0005	669	1	0	0	1	0	0	copy fasta	C19orf85	chr19	55458001	55469751
C1D_chr2_68036130_68068004	0/0	t0001	1810	62	0	3	53	0	6	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0002	1818	41	5	18	11	3	4	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	1/0	t0003	1816	40	2	12	18	4	3	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0004	1816	39	28	5	0	0	6	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0005	1819	32	2	12	11	1	6	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0006	1820	23	6	3	10	0	4	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0007	1823	20	3	5	8	1	3	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/1	t0008	1822	16	0	6	3	3	3	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0009	1810	16	9	1	0	1	5	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0010	1816	16	16	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0011	1821	14	1	4	7	1	1	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0012	1818	4	4	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0013	1828	3	0	1	1	0	1	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0014	1827	3	0	1	1	1	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0015	1826	3	0	0	2	0	1	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0016	1817	3	2	1	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0017	1821	2	0	0	1	1	0	copy fasta	C1D	chr2	68036130	68068004