JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YAP1_chr11_102105447_102238424	0/0	t0019	3887	2	0	2	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0020	3887	1	0	0	0	0	1	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0021	3887	1	1	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0022	3886	1	1	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0023	3887	1	1	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0024	3887	1	1	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0025	3886	1	0	0	0	0	1	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0026	3886	1	0	1	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0027	3887	1	0	1	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0028	3887	1	0	0	1	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0029	3887	1	1	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0030	3887	1	1	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0031	3887	1	0	0	0	1	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0032	3886	1	1	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0033	3887	1	0	1	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0034	3887	1	0	0	0	0	1	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0035	3887	1	1	0	0	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0036	3887	1	0	0	1	0	0	copy fasta	YAP1	chr11	102105447	102238424
YAP1_chr11_102105447_102238424	0/0	t0037	3887	1	0	0	0	1	0	copy fasta	YAP1	chr11	102105447	102238424
YARS1_chr1_32770239_32822358	1/1	t0001	857	312	71	56	126	16	41	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	t0002	857	8	7	1	0	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	t0003	857	3	2	1	0	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	t0004	857	2	0	0	2	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	t0005	857	2	2	0	0	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	t0006	857	1	1	0	0	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	t0007	857	1	0	0	1	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	t0008	857	1	0	0	0	0	1	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	t0009	857	1	0	0	1	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS1_chr1_32770239_32822358	0/0	t0010	857	1	1	0	0	0	0	copy fasta	YARS1	chr1	32770239	32822358
YARS2_chr12_32741544_32760897	1/1	t0001	684	320	68	67	143	10	30	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	t0002	684	43	14	9	12	3	5	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	t0003	684	10	5	1	1	0	3	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	t0004	684	9	0	4	0	1	4	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	t0005	684	5	5	0	0	0	0	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	t0006	684	4	3	1	0	0	0	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	t0007	684	2	0	0	0	0	2	copy fasta	YARS2	chr12	32741544	32760897
YARS2_chr12_32741544_32760897	0/0	t0008	684	1	1	0	0	0	0	copy fasta	YARS2	chr12	32741544	32760897
YBEY_chr21_46281342_46302751	0/0	t0001	236	196	77	43	51	9	16	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	1/0	t0002	236	125	3	13	95	6	7	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	0/1	t0003	236	68	16	17	15	3	16	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	0/0	t0004	236	10	2	0	3	0	5	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	0/0	t0005	236	2	0	0	2	0	0	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	0/0	t0006	236	2	0	2	0	0	0	copy fasta	YBEY	chr21	46281342	46302751
YBEY_chr21_46281342_46302751	0/0	t0007	236	1	0	1	0	0	0	copy fasta	YBEY	chr21	46281342	46302751
YBX1_chr1_42677418_42708805	1/1	t0001	2005	184	41	41	78	5	17	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0002	2005	73	21	13	19	4	16	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0003	2005	70	1	5	57	2	5	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0004	2005	49	8	11	24	3	3	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0005	2005	5	5	0	0	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0006	2005	4	1	2	0	0	1	copy fasta	YBX1	chr1	42677418	42708805