JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YBX1_chr1_42677418_42708805	0/0	t0007	2005	2	2	0	0	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0008	2005	2	0	0	2	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0009	2005	2	0	0	2	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0010	2005	2	2	0	0	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0011	2005	1	0	0	0	0	1	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0012	2005	1	1	0	0	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0013	2005	1	0	0	0	0	1	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0014	2005	1	1	0	0	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0015	2005	1	1	0	0	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0016	2005	1	1	0	0	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0017	2005	1	0	0	1	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0018	2005	1	1	0	0	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX1_chr1_42677418_42708805	0/0	t0019	2005	1	0	0	1	0	0	copy fasta	YBX1	chr1	42677418	42708805
YBX2_chr17_7283263_7299639	1/1	t0001	560	240	66	32	121	3	16	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	t0002	560	198	28	48	79	15	28	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	t0003	560	1	0	0	1	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX2_chr17_7283263_7299639	0/0	t0004	560	1	0	0	1	0	0	copy fasta	YBX2	chr17	7283263	7299639
YBX3_chr12_10694089_10728323	0/0	t0001	813	128	20	13	82	1	12	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/1	t0002	813	116	13	25	56	5	16	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0003	813	101	30	24	30	9	8	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0004	813	45	10	9	19	2	5	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	1/0	t0005	813	11	10	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0006	814	9	1	2	6	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0007	814	5	3	2	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0008	812	4	0	0	2	1	1	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0009	813	2	0	0	2	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0010	813	2	0	0	2	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0011	814	2	0	1	1	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0012	813	2	0	0	2	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0013	813	1	1	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0014	813	1	0	1	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0015	813	1	0	0	1	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0016	813	1	1	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0017	812	1	0	1	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0018	814	1	1	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0019	812	1	0	0	1	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0020	813	1	1	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0021	814	1	1	0	0	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0022	814	1	0	0	1	0	0	copy fasta	YBX3	chr12	10694089	10728323
YBX3_chr12_10694089_10728323	0/0	t0023	814	1	0	0	1	0	0	copy fasta	YBX3	chr12	10694089	10728323
YDJC_chr22_21623089_21635022	1/1	t0001	338	413	98	72	186	14	41	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	t0002	338	3	0	0	0	0	3	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	t0003	338	2	0	0	0	0	2	copy fasta	YDJC	chr22	21623089	21635022
YDJC_chr22_21623089_21635022	0/0	t0004	338	2	0	0	2	0	0	copy fasta	YDJC	chr22	21623089	21635022
YEATS2_chr3_183692797_183817624	1/0	t0001	2258	146	41	43	41	7	13	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/1	t0002	2258	130	32	23	58	6	10	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	t0003	2258	20	0	0	17	0	3	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	t0004	2258	2	2	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	t0005	2258	2	2	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	t0006	2258	1	0	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624