JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YEATS2_chr3_183692797_183817624	0/0	t0007	2258	1	0	0	1	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	t0008	2258	1	0	0	0	0	1	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	t0009	2258	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	t0010	2258	1	0	1	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	t0011	2258	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	t0012	2258	1	0	1	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	t0013	2258	1	1	0	0	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	t0014	2258	1	0	0	0	1	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS2_chr3_183692797_183817624	0/0	t0015	2258	1	0	0	1	0	0	copy fasta	YEATS2	chr3	183692797	183817624
YEATS4_chr12_69354743_69395870	1/0	t0001	785	173	18	26	102	5	21	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/0	t0002	785	135	57	23	30	9	16	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/0	t0003	785	67	2	13	49	0	3	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/0	t0004	785	10	9	1	0	0	0	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/0	t0005	785	5	0	3	0	2	0	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/0	t0006	785	4	3	1	0	0	0	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/1	t0007	785	3	0	0	0	0	2	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/0	t0008	785	2	0	0	0	0	2	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/0	t0009	785	2	0	0	2	0	0	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/0	t0010	785	1	0	1	0	0	0	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/0	t0011	785	1	0	0	1	0	0	copy fasta	YEATS4	chr12	69354743	69395870
YEATS4_chr12_69354743_69395870	0/0	t0012	785	1	1	0	0	0	0	copy fasta	YEATS4	chr12	69354743	69395870
YES1_chr18_716588_817242	0/1	t0001	2974	57	22	9	17	0	8	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0002	2974	56	1	10	37	1	7	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0003	2978	46	4	6	34	1	1	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0004	2974	38	6	2	22	1	7	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0005	2974	21	0	12	4	1	4	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0006	2974	20	0	0	19	0	1	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0007	2974	18	0	16	1	1	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0008	2976	9	8	1	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0009	2974	5	5	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0010	2978	5	0	0	5	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0011	2978	5	5	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	1/0	t0012	2974	4	2	1	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0013	2974	4	0	0	4	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0014	2974	4	2	1	0	0	1	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0015	2974	3	0	0	0	0	3	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0016	2976	3	3	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0017	2974	3	3	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0018	2978	3	0	2	0	1	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0019	2974	3	0	0	3	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0020	2974	3	2	1	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0021	2978	3	3	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0022	2978	2	0	0	0	2	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0023	2974	2	0	0	2	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0024	2974	2	2	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0025	2974	2	2	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0026	2974	2	0	0	2	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0027	2974	2	2	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0028	2974	2	0	0	0	0	2	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0029	2974	2	0	0	0	2	0	copy fasta	YES1	chr18	716588	817242