JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YES1_chr18_716588_817242	0/0	t0030	2974	2	0	0	2	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0031	2974	2	0	0	2	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0032	2974	2	1	1	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0033	2978	2	2	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0034	2974	2	2	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0035	2974	1	0	0	1	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0036	2974	1	0	0	1	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0037	2974	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0038	2974	1	0	0	1	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0039	2974	1	0	0	1	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0040	2974	1	0	0	1	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0041	2974	1	0	0	0	0	1	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0042	2974	1	0	1	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0043	2974	1	0	1	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0044	2974	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0045	2974	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0046	2976	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0047	2974	1	0	1	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0048	2974	1	0	0	1	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0049	2974	1	0	0	0	0	1	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0050	2976	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0051	2976	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0052	2974	1	0	0	1	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0053	2974	1	0	0	0	0	1	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0054	2974	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0055	2974	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0056	2974	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0057	2978	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0058	2978	1	0	0	1	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0059	2978	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0060	2974	1	0	0	1	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0061	2974	1	0	1	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0062	2974	1	0	0	0	0	1	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0063	2974	1	0	0	0	0	1	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0064	2974	1	0	0	1	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0065	2974	1	0	0	1	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0066	2974	1	0	0	1	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0067	2976	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0068	2974	1	0	0	0	0	1	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0069	2974	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0070	2974	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YES1_chr18_716588_817242	0/0	t0071	2974	1	1	0	0	0	0	copy fasta	YES1	chr18	716588	817242
YIF1A_chr11_66279580_66294143	1/1	t0001	216	313	63	61	139	13	35	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	t0002	216	91	11	14	56	3	7	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	t0003	216	33	20	2	11	0	0	copy fasta	YIF1A	chr11	66279580	66294143
YIF1A_chr11_66279580_66294143	0/0	t0004	216	1	0	1	0	0	0	copy fasta	YIF1A	chr11	66279580	66294143
YIF1B_chr19_38298558_38320947	1/1	t0001	1825	163	37	34	61	13	16	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0002	1840	74	3	9	57	1	4	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0003	1822	69	4	20	32	0	13	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0004	1825	36	5	8	22	1	0	copy fasta	YIF1B	chr19	38298558	38320947